myRT

myRT report for GCA_900079775.1_PRJEB13540

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Seq: LT556050.1 Prevotella sp. KHD1 genome assembly, scaffold: scaffold00017, whole genome shotgun sequence (591127 bp)
Overview 1 RT 1: 471351-474724 bp Neighborhood of RT #1 [471351, 474816] COG3943 RVT-Retrons HTH_17 Feature: gene Location: 471351-471716 bp Feature: domain Description: COG3943 Location: 471393-471648 bp Feature: domain Description: COG3943 Location: 471 393-471 648 bp Feature: gene Location: 471981-472856 bp Feature: gene Location: 472887-473744 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 473049-473574 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 473049-473574 bp Feature: gene Location: 473769-473984 bp Feature: gene Location: 474451-474816 bp Feature: domain Description: HTH_17 Location: 474586-474724 bp Feature: domain Description: HTH_1 7 Location: 474586-474724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-Retrons, HTH_17 (pfam12728)

Seq: LT556035.1 Prevotella sp. KHD1 genome assembly, scaffold: scaffold00002, whole genome shotgun sequence (458913 bp)
Overview 1 RT 1: 364937-371012 bp Neighborhood of RT #1 [364937, 371012] DDE_Tnp_IS66_C DUF772 DDE_Tnp_1 RVT-UG28b PriCT_2 Feature: gene Location: 364937-365158 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 365006-365120 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 365006-36512 0 bp Feature: gene Location: 365233-366540 bp Feature: domain Description: DUF772 Location: 365383-365602 bp Feature: domain Description: DUF772 Location: 365383-365602 bp Feature: domain Description: DDE_Tnp_1 Location: 366037-366451 bp Feature: domain Description: DDE_Tnp_1 Location: 366037-366451 bp Feature: gene Location: 366802-368499 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 367225-367951 bp Feature: RT Description: RVT-UG2 8b Note: UG2 8b RT Location: 3672 2 5-367951 bp Feature: gene Location: 368647-369168 bp Feature: domain Description: PriCT_2 Location: 368929-369139 bp Feature: domain Description: PriCT_2 Location: 36892 9-369139 bp Feature: gene Location: 369513-371012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), RVT-UG28b, PriCT_2 (pfam08707)