myRT

myRT report for GCA_900084465.1_11983_8_50

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Seq: FLBJ01000017.1 (112018 bp)
Overview 1 RT 1: 33708-39013 bp Neighborhood of RT #1 [33708, 39015] PinE XerC RVT-GII PRK10276 umuC Feature: gene Location: 33708-34286 bp Feature: domain Description: PinE Location: 33711-34257 bp Feature: domain Description: PinE Location: 3371 1 -34257 bp Feature: gene Location: 34343-34759 bp Feature: domain Description: XerC Location: 34412-34718 bp Feature: domain Description: XerC Location: 3441 2-3471 8 bp Feature: gene Location: 35763-37250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36168-36858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 68-36858 bp Feature: gene Location: 37329-37748 bp Feature: domain Description: PRK10276 Location: 37332-37743 bp Feature: domain Description: PRK1 0276 Location: 37332-37743 bp Feature: gene Location: 37750-39015 bp Feature: domain Description: umuC Location: 37753-39013 bp Feature: domain Description: umuC Location: 37753-3901 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), XerC (COG4973), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: FLBJ01000015.1 (151840 bp)
Overview 1 RT 1: 32146-38999 bp Neighborhood of RT #1 [32146, 39016] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 32146-32811 bp Feature: domain Description: INT_P4_C Location: 32251-32809 bp Feature: domain Description: INT_P4_C Location: 32 2 51-32 809 bp Feature: gene Location: 33072-33512 bp Feature: domain Description: Integrase_1 Location: 33078-33294 bp Feature: domain Description: Integrase_1 Location: 33078-332 94 bp Feature: gene Location: 33569-35647 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33977-34421 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33977-3442 1 bp Feature: gene Location: 35647-38256 bp Feature: domain Description: FimD Location: 35704-38245 bp Feature: domain Description: FimD Location: 35704-382 45 bp Feature: gene Location: 38288-39016 bp Feature: domain Description: FimC Location: 38336-38999 bp Feature: domain Description: FimC Location: 38336-38999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: FLBJ01000036.1 (7154 bp)
Overview 1 RT 1: 60-3208 bp Neighborhood of RT #1 [60, 3273] RVT-GII GIIM PHA02517 Feature: gene Location: 60-191 bp Feature: gene Location: 440-646 bp Feature: gene Location: 733-2256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-1738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006-173 8 bp Feature: domain Description: GIIM Note: maturase Location: 1813-2011 bp Feature: domain Description: GIIM Note: maturase Location: 1813 -2011 bp Feature: gene Location: 2210-2635 bp Feature: gene Location: 2848-3273 bp Feature: domain Description: PHA02517 Location: 2872-3208 bp Feature: domain Description: PHA02517 Location: 2872-3 208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)