myRT

myRT report for GCA_900085215.1_12045_6_95

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Seq: FLEW01000032.1 (14852 bp)
Overview 1 RT 1: 3842-8883 bp Neighborhood of RT #1 [3842, 8883] DUF3560 AdoMet_MTases RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3842-5203 bp Feature: domain Description: DUF3560 Location: 4109-4466 bp Feature: domain Description: DUF3560 Location: 41 09-4466 bp Feature: gene Location: 5249-5812 bp Feature: domain Description: AdoMet_MTases Location: 5411-5711 bp Feature: domain Description: AdoMet_MTases Location: 541 1 -571 1 bp Feature: gene Location: 6169-7836 bp Feature: domain Description: RVT_N Location: 6217-6454 bp Feature: domain Description: RVT_N Location: 621 7-6454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6505-7147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6505-71 47 bp Feature: domain Description: GIIM Note: maturase Location: 7198-7432 bp Feature: domain Description: GIIM Note: maturase Location: 71 98-7432 bp Feature: domain Description: HNHc Note: nucleases Location: 7642-7801 bp Feature: domain Description: HNHc Note: nucleases Location: 7642-7801 bp Feature: gene Location: 8116-8298 bp Feature: gene Location: 8410-8883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), AdoMet_MTases (cl17173), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: FLEW01000008.1 (329174 bp)
Overview 1 RT 1: 290343-297211 bp Neighborhood of RT #1 [290343, 297213] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 290343-291071 bp Feature: domain Description: FimC Location: 290391-291054 bp Feature: domain Description: FimC Location: 2 90391-2 91054 bp Feature: gene Location: 291103-293712 bp Feature: domain Description: FimD Location: 291160-293701 bp Feature: domain Description: FimD Location: 2 91160-2 93701 bp Feature: gene Location: 293712-295790 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 294120-294564 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 9412 0-2 94564 bp Feature: gene Location: 295847-296287 bp Feature: domain Description: Integrase_1 Location: 295853-296069 bp Feature: domain Description: Integrase_1 Location: 2 95853-2 96069 bp Feature: gene Location: 296548-297213 bp Feature: domain Description: INT_P4_C Location: 296653-297211 bp Feature: domain Description: INT_P4_C Location: 2 96653-2 972 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: FLEW01000017.1 (85247 bp)
Overview 1 RT 1: 20059-29671 bp Neighborhood of RT #1 [20059, 29787] COG2958 AAA_15 AAA_15 RVT-Retrons COG0610 AAA_13 AAA_13 Feature: gene Location: 20059-20991 bp Feature: domain Description: COG2958 Location: 20077-20971 bp Feature: domain Description: COG2958 Location: 20077-20971 bp Feature: gene Location: 21541-23682 bp Feature: domain Description: AAA_15 Location: 21568-21985 bp Feature: domain Description: AAA_15 Location: 21568-21985 bp Feature: domain Description: AAA_15 Location: 22123-22549 bp Feature: domain Description: AAA_15 Location: 22123 -22549 bp Feature: gene Location: 23855-24955 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23996-24557 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 996-24557 bp Feature: gene Location: 25497-28616 bp Feature: domain Description: COG0610 Location: 25581-28593 bp Feature: domain Description: COG0610 Location: 25581-28593 bp Feature: gene Location: 28609-29787 bp Feature: domain Description: AAA_13 Location: 28702-28876 bp Feature: domain Description: AAA_13 Location: 28702-28876 bp Feature: domain Description: AAA_13 Location: 29098-29671 bp Feature: domain Description: AAA_13 Location: 29098-29671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2958 (Uncharacterized protein ), AAA_15 (pfam13175), RVT-Retrons, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), AAA_13 (pfam13166)