myRT

myRT report for GCA_900085375.1_12045_7_22

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Seq: FLFM01000022.1 (36072 bp)
Overview 1 RT 1: 21006-25651 bp Neighborhood of RT #1 [21006, 25659] RVT-GII PRK10276 umuC Feature: gene Location: 21006-21437 bp Feature: gene Location: 21569-21838 bp Feature: gene Location: 21907-23394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22312-23002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2231 2-23002 bp Feature: gene Location: 23548-24231 bp Feature: domain Description: PRK10276 Location: 23851-24214 bp Feature: domain Description: PRK1 0276 Location: 23851 -2421 4 bp Feature: gene Location: 25150-25659 bp Feature: domain Description: umuC Location: 25156-25651 bp Feature: domain Description: umuC Location: 251 56-25651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: FLFM01000020.1 (51156 bp)
Overview 1 RT 1: 25651-28672 bp Neighborhood of RT #1 [25651, 28689] SmpB RVT-UG11 PRK09678 Feature: gene Location: 25651-26064 bp Feature: gene Location: 26196-26678 bp Feature: domain Description: SmpB Location: 26226-26670 bp Feature: domain Description: SmpB Location: 2 62 2 6-2 6670 bp Feature: gene Location: 27294-28067 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 27429-27882 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 742 9-2 7882 bp Feature: gene Location: 28036-28224 bp Feature: gene Location: 28471-28689 bp Feature: domain Description: PRK09678 Location: 28474-28672 bp Feature: domain Description: PRK09678 Location: 2 8474-2 8672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: FLFM01000033.1 (6864 bp)
Overview 1 RT 1: 1-2700 bp Neighborhood of RT #1 [1, 2765] RVT-GII GIIM PHA02517 Feature: gene Location: 1-138 bp Feature: gene Location: 225-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 498-123 0 bp Feature: domain Description: GIIM Note: maturase Location: 1305-1503 bp Feature: domain Description: GIIM Note: maturase Location: 13 05-1503 bp Feature: gene Location: 1702-2127 bp Feature: gene Location: 2340-2765 bp Feature: domain Description: PHA02517 Location: 2364-2700 bp Feature: domain Description: PHA02517 Location: 23 64-2700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: FLFM01000026.1 (29139 bp)
Overview 1 RT 1: 21133-24341 bp Neighborhood of RT #1 [21133, 24341] PRK10276 RVT-GII Feature: gene Location: 21133-21558 bp Feature: domain Description: PRK10276 Location: 21136-21544 bp Feature: domain Description: PRK10276 Location: 21136-2154 4 bp Feature: gene Location: 21676-21909 bp Feature: gene Location: 21960-23495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22365-23103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22365-23103 bp Feature: gene Location: 23729-23959 bp Feature: gene Location: 24018-24341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII

Seq: FLFM01000007.1 (328805 bp)
Overview 1 RT 1: 317977-324830 bp Neighborhood of RT #1 [317977, 324847] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 317977-318642 bp Feature: domain Description: INT_P4_C Location: 318082-318640 bp Feature: domain Description: INT_P4_C Location: 318082-318640 bp Feature: gene Location: 318903-319343 bp Feature: domain Description: Integrase_1 Location: 318909-319125 bp Feature: domain Description: Integrase_1 Location: 318909-319125 bp Feature: gene Location: 319400-321478 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 319808-320252 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 319808-32025 2 bp Feature: gene Location: 321478-324087 bp Feature: domain Description: FimD Location: 321535-324076 bp Feature: domain Description: FimD Location: 3215 35 -324076 bp Feature: gene Location: 324119-324847 bp Feature: domain Description: FimC Location: 324167-324830 bp Feature: domain Description: FimC Location: 324167-324830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)