myRT

myRT report for GCA_900085885.1_12082_2_3

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Seq: FLHL01000013.1 (171581 bp)
Overview 1 RT 1: 112831-119699 bp Neighborhood of RT #1 [112831, 119701] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 112831-113559 bp Feature: domain Description: FimC Location: 112879-113542 bp Feature: domain Description: FimC Location: 1 1 2879-1 1 3542 bp Feature: gene Location: 113591-116200 bp Feature: domain Description: FimD Location: 113648-116189 bp Feature: domain Description: FimD Location: 1 1 3648-1 1 61 89 bp Feature: gene Location: 116200-118278 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 116608-117052 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 6608-1 1 7052 bp Feature: gene Location: 118335-118775 bp Feature: domain Description: Integrase_1 Location: 118341-118557 bp Feature: domain Description: Integrase_1 Location: 1 1 8341 -1 1 8557 bp Feature: gene Location: 119036-119701 bp Feature: domain Description: INT_P4_C Location: 119141-119699 bp Feature: domain Description: INT_P4_C Location: 1 1 91 41 -1 1 9699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: FLHL01000030.1 (7404 bp)
Overview 1 RT 1: 68-3216 bp Neighborhood of RT #1 [68, 3281] RVT-GII GIIM PHA02517 Feature: gene Location: 68-199 bp Feature: gene Location: 448-654 bp Feature: gene Location: 741-2264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014-1746 bp Feature: domain Description: GIIM Note: maturase Location: 1821-2019 bp Feature: domain Description: GIIM Note: maturase Location: 182 1-2 019 bp Feature: gene Location: 2218-2643 bp Feature: gene Location: 2856-3281 bp Feature: domain Description: PHA02517 Location: 2880-3216 bp Feature: domain Description: PHA02 517 Location: 2 880-32 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: FLHL01000023.1 (33446 bp)
Overview 1 RT 1: 18537-23025 bp Neighborhood of RT #1 [18537, 23033] RVT-GII PRK10276 umuC Feature: gene Location: 18537-18968 bp Feature: gene Location: 19100-19369 bp Feature: gene Location: 19438-20925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19843-20533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19843 -2053 3 bp Feature: gene Location: 21079-21762 bp Feature: domain Description: PRK10276 Location: 21382-21745 bp Feature: domain Description: PRK10276 Location: 213 82-21745 bp Feature: gene Location: 21762-23033 bp Feature: domain Description: umuC Location: 21765-23025 bp Feature: domain Description: umuC Location: 21765-23 025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)