myRT

myRT report for GCA_900085945.1_12082_2_14

Download annotations/find similar RTs

Seq: FLHT01000006.1 (287648 bp)
Overview 1 RT 1: 31931-38784 bp Neighborhood of RT #1 [31931, 38801] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 31931-32596 bp Feature: domain Description: INT_P4_C Location: 32036-32594 bp Feature: domain Description: INT_P4_C Location: 32036-32594 bp Feature: gene Location: 32857-33297 bp Feature: domain Description: Integrase_1 Location: 32863-33079 bp Feature: domain Description: Integrase_1 Location: 32863-33079 bp Feature: gene Location: 33354-35432 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33762-34206 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 33762-34206 bp Feature: gene Location: 35432-38041 bp Feature: domain Description: FimD Location: 35489-38030 bp Feature: domain Description: FimD Location: 35489-38030 bp Feature: gene Location: 38073-38801 bp Feature: domain Description: FimC Location: 38121-38784 bp Feature: domain Description: FimC Location: 381 21 -38784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: FLHT01000036.1 (7709 bp)
Overview 1 RT 1: 4137-7706 bp Neighborhood of RT #1 [4137, 7706] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 4137-4370 bp Feature: domain Description: DUF905 Location: 4167-4365 bp Feature: domain Description: DUF905 Location: 4167-4365 bp Feature: gene Location: 4428-4868 bp Feature: domain Description: PRK13732 Location: 4434-4866 bp Feature: domain Description: PRK13732 Location: 4434-4866 bp Feature: gene Location: 5063-6964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5330-6161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5330-6161 bp Feature: domain Description: Intron_maturas2 Location: 6275-6533 bp Feature: domain Description: Intron_maturas2 Location: 62 75-6533 bp Feature: domain Description: HNHc Note: nucleases Location: 6707-6869 bp Feature: domain Description: HNHc Note: nucleases Location: 6707-6869 bp Feature: gene Location: 7566-7706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: FLHT01000019.1 (90163 bp)
Overview 1 RT 1: 88018-89713 bp Neighborhood of RT #1 [88018, 90105] RVT-GII Feature: gene Location: 88018-88164 bp Feature: gene Location: 88445-88612 bp Feature: gene Location: 88618-90105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89023-89713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89023 -89713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FLHT01000024.1 (58380 bp)
Overview 1 RT 1: 47404-51007 bp Neighborhood of RT #1 [47404, 51132] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 47404-47661 bp Feature: gene Location: 47692-47967 bp Feature: gene Location: 48541-50208 bp Feature: domain Description: RVT_N Location: 48589-48826 bp Feature: domain Description: RVT_N Location: 4 8589-4 8826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48877-49519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 8877-4 9519 bp Feature: domain Description: GIIM Note: maturase Location: 49570-49804 bp Feature: domain Description: GIIM Note: maturase Location: 4 9570-4 9804 bp Feature: domain Description: HNHc Note: nucleases Location: 50014-50173 bp Feature: domain Description: HNHc Note: nucleases Location: 50014 -50173 bp Feature: gene Location: 50522-50713 bp Feature: gene Location: 50710-51132 bp Feature: domain Description: DUF1380 Location: 50713-51007 bp Feature: domain Description: DUF1380 Location: 50713-51007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)