myRT

myRT report for GCA_900086605.1_PRJEB13958

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Seq: LT571468.1 (599120 bp)
Overview 1 RT 1: 595955-599113 bp Neighborhood of RT #1 [595955, 599118] COG5015 HipB COG2932 RVT_N RVT-GII GIIM Feature: gene Location: 595955-596290 bp Feature: domain Description: COG5015 Location: 595958-596249 bp Feature: domain Description: COG501 5 Location: 595958-596249 bp Feature: gene Location: 596397-597128 bp Feature: domain Description: HipB Location: 596409-596628 bp Feature: domain Description: HipB Location: 596409-596628 bp Feature: domain Description: COG2932 Location: 596781-597093 bp Feature: domain Description: COG2932 Location: 596781 -597093 bp Feature: gene Location: 597949-599118 bp Feature: domain Description: RVT_N Location: 598000-598237 bp Feature: domain Description: RVT_N Location: 598000-598237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598288-598936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 598288-598936 bp Feature: domain Description: GIIM Note: maturase Location: 598987-599113 bp Feature: domain Description: GIIM Note: maturase Location: 598987-5991 1 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5015 (Uncharacterized protein, pyridoxamine 5'-phosphate oxidase (PNPOx-like) family ), HipB (COG1396), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LT571469.1 (827254 bp)
Overview 1 RT 1: 789985-792292 bp Neighborhood of RT #1 [789985, 792292] KOG4768 RVT-GII Feature: gene Location: 789985-790455 bp Feature: gene Location: 790584-791195 bp Feature: domain Description: KOG4768 Location: 790593-791184 bp Feature: domain Description: KOG4768 Location: 790593-791184 bp Feature: gene Location: 791215-791595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791485-791551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791485-791551 bp Feature: gene Location: 791670-791915 bp Feature: gene Location: 792086-792292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII

Seq: LT571471.1 (1440234 bp)
Overview 1 RT 1: 966269-971032 bp 2 RT 2: 1285670-1287995 bp Neighborhood of RT #1 [966269, 971118] PBECR4 RVT-GII GIIM YodL LPD18 DUF4316 Neighborhood of RT #2 [1285670, 1287995] PolY_Pol_IV_kappa RVT-GII GIIM Feature: gene Location: 966269-966946 bp Feature: domain Description: PBECR4 Location: 966362-966884 bp Feature: domain Description: PBECR4 Location: 9663 62-966884 bp Feature: gene Location: 967039-968214 bp Feature: gene Location: 968403-969692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968694-969327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968694-9693 27 bp Feature: domain Description: GIIM Note: maturase Location: 969408-969633 bp Feature: domain Description: GIIM Note: maturase Location: 969408-96963 3 bp Feature: gene Location: 969784-969984 bp Feature: gene Location: 970267-971118 bp Feature: domain Description: YodL Location: 970282-970579 bp Feature: domain Description: YodL Location: 970282-970579 bp Feature: domain Description: LPD18 Location: 970609-970849 bp Feature: domain Description: LPD18 Location: 970609-970849 bp Feature: domain Description: DUF4316 Location: 970903-971032 bp Feature: domain Description: DUF43 16 Location: 970903 -97103 2 bp Feature: gene Location: 1285670-1285804 bp Feature: gene Location: 1285863-1286756 bp Feature: domain Description: PolY_Pol_IV_kappa Location: 1285989-1286736 bp Feature: domain Description: PolY_Pol_IV_kappa Location: 1285989-128673 6 bp Feature: gene Location: 1286753-1287325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286756-1286837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1286756-128683 7 bp Feature: domain Description: GIIM Note: maturase Location: 1286888-1287122 bp Feature: domain Description: GIIM Note: maturase Location: 1286888-1287122 bp Feature: gene Location: 1287358-1287786 bp Feature: gene Location: 1287840-1287995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBECR4 (pfam18813), RVT-GII, GIIM (pfam08388), YodL (pfam14191), LPD18 (pfam18832), DUF4316 (pfam14195), PolY_Pol_IV_kappa (cd03586)