myRT

myRT report for GCA_900088415.1_VmediterraneiCECT0621_SPAdes_Prokka

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Seq: FLLQ01000004.1 (523683 bp)
Overview 1 RT 1: 278747-285131 bp Neighborhood of RT #1 [278747, 285131] Resolvase Recombinase Zn_ribbon_recom RVT-UG8 RVT-UG3 Mob_Pre Feature: gene Location: 278747-280276 bp Feature: domain Description: Resolvase Location: 278768-279236 bp Feature: domain Description: Resolvase Location: 278768-279236 bp Feature: domain Description: Recombinase Location: 279314-279488 bp Feature: domain Description: Recombinase Location: 27931 4-279488 bp Feature: domain Description: Zn_ribbon_recom Location: 279587-279713 bp Feature: domain Description: Zn_ribbon_recom Location: 279587-27971 3 bp Feature: gene Location: 280296-280463 bp Feature: gene Location: 280537-282561 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 281113-281557 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 281 1 1 3-281 557 bp Feature: gene Location: 282562-283788 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 282844-283321 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 282844-283321 bp Feature: gene Location: 283944-284879 bp Feature: domain Description: Mob_Pre Location: 283983-284529 bp Feature: domain Description: Mob_Pre Location: 283983-284529 bp Feature: gene Location: 284880-285131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-UG8, RVT-UG3, Mob_Pre (pfam01076)

Seq: FLLQ01000016.1 (48990 bp)
Overview 1 RT 1: 15200-20022 bp Neighborhood of RT #1 [15200, 20084] Integrase_1 RVT_N RVT-GII GIIM SatD SatD Feature: gene Location: 15200-16129 bp Feature: domain Description: Integrase_1 Location: 15533-15929 bp Feature: domain Description: Integrase_1 Location: 15533-1592 9 bp Feature: gene Location: 16080-16430 bp Feature: gene Location: 17089-18561 bp Feature: domain Description: RVT_N Location: 17137-17377 bp Feature: domain Description: RVT_N Location: 17137-17377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17425-18052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742 5-18052 bp Feature: domain Description: GIIM Note: maturase Location: 18109-18337 bp Feature: domain Description: GIIM Note: maturase Location: 18109-18337 bp Feature: gene Location: 18635-18946 bp Feature: gene Location: 19434-20084 bp Feature: domain Description: SatD Location: 19458-19662 bp Feature: domain Description: SatD Location: 19458-19662 bp Feature: domain Description: SatD Location: 19929-20022 bp Feature: domain Description: SatD Location: 1992 9-2 002 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Integrase_1 (pfam12835), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), SatD (pfam16264)

Seq: FLLQ01000002.1 (799329 bp)
Overview 1 RT 1: 24266-27782 bp Neighborhood of RT #1 [24266, 27782] AbiV_defense RVT_N RVT-GII GIIM Feature: gene Location: 24266-24931 bp Feature: domain Description: AbiV_defense Location: 24323-24746 bp Feature: domain Description: AbiV_defense Location: 243 23 -24746 bp Feature: gene Location: 25131-25346 bp Feature: gene Location: 25358-26830 bp Feature: domain Description: RVT_N Location: 25406-25649 bp Feature: domain Description: RVT_N Location: 25406-25649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25694-26321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25694-263 21 bp Feature: domain Description: GIIM Note: maturase Location: 26381-26606 bp Feature: domain Description: GIIM Note: maturase Location: 263 81-26606 bp Feature: gene Location: 27054-27209 bp Feature: gene Location: 27642-27782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiV_defense (TIGR04498), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)