myRT

myRT report for GCA_900089495.1_BBA-E_PRJEB14159_v1

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Seq: LT605203.1 (4639458 bp)
Overview 1 RT 1: 2244320-2251332 bp 2 RT 2: 2315890-2324858 bp 3 RT 3: 3155661-3158639 bp Neighborhood of RT #1 [2244320, 2251361] COG4127 RVT-UG19 RMtype1_S_EcoR124I-TRD2-CR2_like RMtype1_S_EcoR124I-TRD2-CR2_like HsdM Neighborhood of RT #2 [2315890, 2324866] Mrr_cat zf-C4_Topoisom DDE_Tnp_1 RVT_N RVT-GII GIIM DUF772 RVT-GII PIN_8 DDE_Tnp_ISAZ013 Neighborhood of RT #3 [3155661, 3158674] RVT-GII PRK15447 TnpB_IS66 Feature: gene Location: 2244320-2244907 bp Feature: gene Location: 2245366-2246427 bp Ori: SCC93478.1 Feature: domain Description: COG4127 Location: 2245369-2246401 bp Feature: domain Description: COG41 27 Location: 2245369-2246401 bp Feature: gene Location: 2246440-2248500 bp Ori: SCC93479.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 2246806-2247283 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 2246806-2247283 bp Feature: gene Location: 2248516-2249694 bp Ori: SCC93480.1 Gene: hsdS_2a Feature: domain Description: RMtype1_S_EcoR124I-TRD2-CR2_like Location: 2248819-2249080 bp Feature: domain Description: RMtype1 _S_EcoR1 24I-TRD2-CR2_like Location: 224881 9-2249080 bp Feature: domain Description: RMtype1_S_EcoR124I-TRD2-CR2_like Location: 2249137-2249677 bp Feature: domain Description: RMtype1 _S_EcoR1 24I-TRD2-CR2_like Location: 22491 37-2249677 bp Feature: gene Location: 2249691-2251361 bp Ori: SCC93481.1 Feature: domain Description: HsdM Location: 2250156-2251332 bp Feature: domain Description: HsdM Location: 22501 56-2251 332 bp Feature: gene Location: 2315890-2316204 bp Ori: SCC93546.1 Feature: domain Description: Mrr_cat Location: 2315896-2316007 bp Feature: domain Description: Mrr_cat Location: 231 5896-231 6007 bp Feature: domain Description: zf-C4_Topoisom Location: 2316088-2316181 bp Feature: domain Description: zf-C4_Topoisom Location: 231 6088-231 61 81 bp Feature: gene Location: 2316569-2317303 bp Ori: SCC93547.1 Feature: domain Description: DDE_Tnp_1 Location: 2316758-2317169 bp Feature: domain Description: DDE_Tnp_1 Location: 231 6758-231 71 69 bp Feature: gene Location: 2317242-2318717 bp Ori: SCC93548.1 Feature: domain Description: RVT_N Location: 2317317-2317560 bp Feature: domain Description: RVT_N Location: 231 731 7-231 7560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2317605-2318247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 7605-231 8247 bp Feature: domain Description: GIIM Note: maturase Location: 2318298-2318532 bp Feature: domain Description: GIIM Note: maturase Location: 231 8298-231 8532 bp Feature: gene Location: 2319046-2320242 bp Ori: SCC93549.1 Feature: domain Description: DUF772 Location: 2319262-2319484 bp Feature: domain Description: DUF772 Location: 231 9262-231 9484 bp Feature: gene Location: 2320361-2320537 bp Feature: gene Location: 2320572-2322080 bp Ori: SCC93551.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2320998-2321688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2320998-2321 688 bp Feature: gene Location: 2322543-2323604 bp Ori: SCC93552.1 Feature: domain Description: PIN_8 Location: 2322621-2322939 bp Feature: domain Description: PIN_8 Location: 2322621 -2322939 bp Feature: gene Location: 2323643-2324866 bp Ori: SCC93553.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 2323940-2324858 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 2323940-2324858 bp Feature: gene Location: 3155661-3155930 bp Feature: gene Location: 3156032-3156640 bp Feature: gene Location: 3156487-3157410 bp Ori: SCC94513.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3156490-3157132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 56490-31 571 32 bp Feature: gene Location: 3157656-3158252 bp Ori: SCC94514.1 Feature: domain Description: PRK15447 Location: 3157833-3158235 bp Feature: domain Description: PRK1 5447 Location: 31 57833-31 58235 bp Feature: gene Location: 3158333-3158674 bp Ori: SCC94515.1 Feature: domain Description: TnpB_IS66 Location: 3158351-3158639 bp Feature: domain Description: TnpB_IS66 Location: 31 58351 -31 58639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-UG19, RMtype1_S_EcoR124I-TRD2-CR2_like (cd17249), HsdM (COG0286), Mrr_cat (pfam04471), zf-C4_Topoisom (pfam01396), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
DUF772 (pfam05598), PIN_8 (pfam18476), DDE_Tnp_ISAZ013 (pfam07592), PRK15447 (putative protease; Provisional), TnpB_IS66 (pfam05717)