myRT

myRT report for GCA_900089855.1_VatlanticusCECT7223_Velvet_Prokka

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Seq: FLQP01000010.1 (66100 bp)
Overview 1 RT 1: 55767-61429 bp Neighborhood of RT #1 [55767, 61429] PhdYeFM_antitox SLATT_5 RVT-UG17 PHA01082 Feature: gene Location: 55767-56012 bp Feature: domain Description: PhdYeFM_antitox Location: 55791-55911 bp Feature: domain Description: PhdYeFM_antitox Location: 55791 -5591 1 bp Feature: gene Location: 56411-56968 bp Feature: domain Description: SLATT_5 Location: 56423-56942 bp Feature: domain Description: SLATT_5 Location: 56423-56942 bp Feature: gene Location: 56972-58312 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 57200-57806 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 57200-57806 bp Feature: gene Location: 58574-59053 bp Feature: domain Description: PHA01082 Location: 58664-59048 bp Feature: domain Description: PHA01 082 Location: 58664-59048 bp Feature: gene Location: 59156-61429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), SLATT_5 (pfam18160), RVT-UG17, PHA01082 (putative transcription regulator)

Seq: FLQP01000096.1 (41194 bp)
Overview 1 RT 1: 37614-41193 bp Neighborhood of RT #1 [37614, 41193] LPD25 RVT-GII GIIM Feature: gene Location: 37614-38306 bp Feature: gene Location: 38423-39358 bp Feature: domain Description: LPD25 Location: 38492-38762 bp Feature: domain Description: LPD2 5 Location: 38492 -38762 bp Feature: gene Location: 39585-40457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39651-39948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39651-39948 bp Feature: domain Description: GIIM Note: maturase Location: 40005-40233 bp Feature: domain Description: GIIM Note: maturase Location: 40005-402 33 bp Feature: gene Location: 40530-40901 bp Feature: gene Location: 40933-41193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPD25 (pfam18840), RVT-GII, GIIM (pfam08388)

Seq: FLQP01000061.1 (289587 bp)
Overview 1 RT 1: 278392-282388 bp Neighborhood of RT #1 [278392, 282388] RVT-UG2 Feature: gene Location: 278392-279312 bp Feature: gene Location: 279399-280118 bp Feature: gene Location: 280558-281841 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 280759-281542 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 280759-281542 bp Feature: gene Location: 281907-282062 bp Feature: gene Location: 282233-282388 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: FLQP01000007.1 (82980 bp)
Overview 1 RT 1: 53904-58639 bp Neighborhood of RT #1 [53904, 58659] TIGR02646 COG3950 RVT-Retrons sigma70-ECF AlpA Feature: gene Location: 53904-54677 bp Feature: domain Description: TIGR02646 Location: 53976-54507 bp Feature: domain Description: TIGR0264 6 Location: 53976-54 507 bp Feature: gene Location: 54664-56289 bp Feature: domain Description: COG3950 Location: 54847-56218 bp Feature: domain Description: COG3950 Location: 54 84 7-56218 bp Feature: gene Location: 56282-57226 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56381-56978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56381-56978 bp Feature: gene Location: 57622-58314 bp Feature: domain Description: sigma70-ECF Location: 57685-58297 bp Feature: domain Description: sigma70-ECF Location: 57685-58297 bp Feature: gene Location: 58435-58659 bp Feature: domain Description: AlpA Location: 58474-58639 bp Feature: domain Description: AlpA Location: 584 74 -58639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, sigma70-ECF (TIGR02937), AlpA (COG3311)

Seq: FLQP01000080.1 (5145 bp)
Overview 1 RT 1: 2-4622 bp Neighborhood of RT #1 [2, 4687] RVT_N RVT-GII GIIM Phage_int_SAM_4 INT_C_like_1 Feature: gene Location: 2-163 bp Feature: gene Location: 175-309 bp Feature: gene Location: 907-2277 bp Feature: domain Description: RVT_N Location: 961-1204 bp Feature: domain Description: RVT_N Location: 961-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-1876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-1876 bp Feature: domain Description: GIIM Note: maturase Location: 1936-2161 bp Feature: domain Description: GIIM Note: maturase Location: 1936-2161 bp Feature: gene Location: 2702-3097 bp Feature: gene Location: 3401-4687 bp Feature: domain Description: Phage_int_SAM_4 Location: 3779-3995 bp Feature: domain Description: Phage_int_SAM_4 Location: 3779-3995 bp Feature: domain Description: INT_C_like_1 Location: 4103-4622 bp Feature: domain Description: INT_C_like_1 Location: 4103-4622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_C_like_1 (cd01184)