myRT

myRT report for GCA_900089955.1_A_S1_v1

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Seq: FLQX01000057.1 (2104 bp)
Overview 1 RT 1: 1-1917 bp Neighborhood of RT #1 [1, 2003] Type_II_cohesin RVT-GII GIIM Feature: gene Location: 1-288 bp Feature: gene Location: 510-1298 bp Feature: domain Description: Type_II_cohesin Location: 681-1104 bp Feature: domain Description: Type_II_cohesin Location: 681 -1 1 04 bp Feature: gene Location: 1434-2003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1449-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 449-1 61 7 bp Feature: domain Description: GIIM Note: maturase Location: 1689-1917 bp Feature: domain Description: GIIM Note: maturase Location: 1 689-1 91 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Type_II_cohesin (cd08547), RVT-GII, GIIM (pfam08388)

Seq: FLQX01000168.1 (13316 bp)
Overview 1 RT 1: 3-1534 bp Neighborhood of RT #1 [3, 1605] RVT-GII GIIM DUF4160 DUF2442 Feature: gene Location: 3-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-447 bp Feature: domain Description: GIIM Note: maturase Location: 519-747 bp Feature: domain Description: GIIM Note: maturase Location: 519-747 bp Feature: gene Location: 1038-1304 bp Feature: domain Description: DUF4160 Location: 1065-1260 bp Feature: domain Description: DUF4160 Location: 1065-12 60 bp Feature: gene Location: 1312-1605 bp Feature: domain Description: DUF2442 Location: 1336-1534 bp Feature: domain Description: DUF2 442 Location: 1336-1534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF4160 (pfam13711), DUF2442 (pfam10387)

Seq: FLQX01000150.1 (42350 bp)
Overview 1 RT 1: 26710-29907 bp Neighborhood of RT #1 [26710, 29948] glyco_like_mftF RES RVT-GII GIIM COG5654 Feature: gene Location: 26710-27420 bp Feature: domain Description: glyco_like_mftF Location: 26740-27397 bp Feature: domain Description: glyco_like_mftF Location: 26740-273 97 bp Feature: gene Location: 27503-27838 bp Feature: domain Description: RES Location: 27560-27782 bp Feature: domain Description: RES Location: 27560-27782 bp Feature: gene Location: 27926-29245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28268-28892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28268-28892 bp Feature: domain Description: GIIM Note: maturase Location: 28937-29147 bp Feature: domain Description: GIIM Note: maturase Location: 2893 7-29147 bp Feature: gene Location: 29282-29503 bp Feature: gene Location: 29739-29948 bp Feature: domain Description: COG5654 Location: 29745-29907 bp Feature: domain Description: COG5654 Location: 29745-29907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT glyco_like_mftF (TIGR04283), RES (smart00953), RVT-GII, GIIM (pfam08388), COG5654 (Uncharacterized conserved protein, contains RES domain )

Seq: FLQX01000125.1 (67704 bp)
Overview 1 RT 1: 41738-45465 bp Neighborhood of RT #1 [41738, 45465] YfmG Avd_like RVT-DGRs YfmG VagC Feature: gene Location: 41738-42781 bp Feature: domain Description: YfmG Location: 41906-42770 bp Feature: domain Description: YfmG Location: 4 1906-4 2770 bp Feature: gene Location: 42915-43280 bp Feature: domain Description: Avd_like Location: 42957-43260 bp Feature: domain Description: Avd_like Location: 4 2957-4 3260 bp Feature: gene Location: 43264-44538 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43474-44113 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 34 74 -4 4 113 bp Feature: domain Description: YfmG Location: 44347-44467 bp Feature: domain Description: YfmG Location: 4 4 34 7-4 4 4 67 bp Feature: gene Location: 44900-45196 bp Feature: domain Description: VagC Location: 44921-45125 bp Feature: domain Description: VagC Location: 4 4 921-4 5125 bp Feature: gene Location: 45229-45465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, VagC (COG4456)