myRT

myRT report for GCA_900090165.1_IMG-taxon_2518645617_annotated_assembly

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Seq: FMHM01000010.1 Streptomyces sp. AmelKG-E11A genome assembly, contig: YW7DRAFT_scaffold00010.10, whole genome shotgun sequence (286883 bp)
Overview 1 RT 1: 273682-278541 bp Neighborhood of RT #1 [273682, 278541] DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc MhpC Feature: gene Location: 273682-274008 bp Feature: domain Description: DDE_Tnp_1 Location: 273688-273856 bp Feature: domain Description: DDE_Tnp_1 Location: 273688-273856 bp Feature: gene Location: 274722-275003 bp Feature: gene Location: 275103-276248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275109-275523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2751 09-275523 bp Feature: domain Description: Intron_maturas2 Location: 275640-275853 bp Feature: domain Description: Intron_maturas2 Location: 275640-275853 bp Feature: domain Description: HNHc Note: nucleases Location: 276045-276204 bp Feature: domain Description: HNHc Note: nucleases Location: 276045-276204 bp Feature: gene Location: 276615-277346 bp Feature: domain Description: MhpC Location: 276633-277329 bp Feature: domain Description: MhpC Location: 276633-277329 bp Feature: gene Location: 278242-278541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MhpC (COG0596)

Seq: FMHM01000029.1 Streptomyces sp. AmelKG-E11A genome assembly, contig: YW7DRAFT_scaffold00029.29, whole genome shotgun sequence (123934 bp)
Overview 1 RT 1: 99513-108235 bp Neighborhood of RT #1 [99513, 108240] Disaggr_repeat CBM6-CBM35-CBM36_like_2 Disaggr_repeat Disaggr_repeat RVT-Retrons RVT-Retrons Peptidase_M78 CspC Feature: gene Location: 99513-102605 bp Feature: domain Description: Disaggr_repeat Location: 100467-100722 bp Feature: domain Description: Disaggr_repeat Location: 100467-10072 2 bp Feature: domain Description: CBM6-CBM35-CBM36_like_2 Location: 100755-101142 bp Feature: domain Description: CBM6-CBM35-CBM36_like_2 Location: 100755-101142 bp Feature: domain Description: Disaggr_repeat Location: 101181-101280 bp Feature: domain Description: Disaggr_repeat Location: 101181-1012 80 bp Feature: domain Description: Disaggr_repeat Location: 101997-102216 bp Feature: domain Description: Disaggr_repeat Location: 101997-102 2 16 bp Feature: gene Location: 102760-102924 bp Feature: gene Location: 103843-105960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103939-104197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103939-104197 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104434-104707 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104434-104707 bp Feature: domain Description: Peptidase_M78 Location: 105586-105787 bp Feature: domain Description: Peptidase_M78 Location: 105586-105787 bp Feature: gene Location: 107492-107632 bp Feature: gene Location: 108037-108240 bp Feature: domain Description: CspC Location: 108040-108235 bp Feature: domain Description: CspC Location: 108040-1082 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Disaggr_repeat (pfam06848), CBM6-CBM35-CBM36_like_2 (cd14488), RVT-Retrons, Peptidase_M78 (pfam06114), CspC (COG1278)