myRT

myRT report for GCA_900091415.1_IMG-taxon_2636415978_annotated_assembly

Download annotations/find similar RTs

Seq: FMHU01000001.1 (3286777 bp)
Overview 1 RT 1: 2230508-2237063 bp Neighborhood of RT #1 [2230508, 2237194] DDE_5 RVT-GII GIIM COG3293 COG3293 HTH_29 DDE_3 Feature: gene Location: 2230508-2230987 bp Feature: gene Location: 2231226-2232713 bp Feature: domain Description: DDE_5 Location: 2231295-2232081 bp Feature: domain Description: DDE_5 Location: 2231 295-2232081 bp Feature: gene Location: 2232821-2234233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2233163-2233859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22331 63-2233859 bp Feature: domain Description: GIIM Note: maturase Location: 2233931-2234147 bp Feature: domain Description: GIIM Note: maturase Location: 2233931 -22341 47 bp Feature: gene Location: 2234612-2235529 bp Feature: domain Description: COG3293 Location: 2234636-2234975 bp Feature: domain Description: COG3293 Location: 2234636-2234975 bp Feature: domain Description: COG3293 Location: 2235101-2235512 bp Feature: domain Description: COG3293 Location: 22351 01 -223551 2 bp Feature: gene Location: 2236097-2237194 bp Feature: domain Description: HTH_29 Location: 2236211-2236391 bp Feature: domain Description: HTH_29 Location: 223621 1 -2236391 bp Feature: domain Description: DDE_3 Location: 2236628-2237063 bp Feature: domain Description: DDE_3 Location: 2236628-2237063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), COG3293 (Transposase ), HTH_29 (pfam13551), DDE_3 (pfam13358)

Seq: FMHU01000002.1 (3600009 bp)
Overview 1 RT 1: 303551-309896 bp 2 RT 2: 1094974-1098877 bp 3 RT 3: 1124351-1128576 bp 4 RT 4: 1982653-1986288 bp 5 RT 5: 2583353-2590077 bp 6 RT 6: 2625645-2631046 bp 7 RT 7: 3293509-3296921 bp Neighborhood of RT #1 [303551, 309940] HTH_XRE HTH_31 RVT_N RVT-GII GIIM YdfJ acpP Neighborhood of RT #2 [1094974, 1098877] HTH_32 rve RVT-GII GIIM Neighborhood of RT #3 [1124351, 1128914] COG3293 COG3293 RVT-GII Nterm_IS4 DDE_Tnp_1 Neighborhood of RT #4 [1982653, 1986288] TPR_12 TPR_12 RVT-GII GIIM PadR Neighborhood of RT #5 [2583353, 2590094] rve_3 IS285 RVT-GII GIIM MglA AraH Neighborhood of RT #6 [2625645, 2631081] HTH_Tnp_4 DDE_Tnp_4 COG3293 COG3293 RVT-GII GIIM DDE_Tnp_1_assoc DDE_Tnp_1 DDE_Tnp_4 Neighborhood of RT #7 [3293509, 3296929] RVT-GII GIIM ElsH Feature: gene Location: 303551-304258 bp Feature: domain Description: HTH_XRE Location: 303557-303692 bp Feature: domain Description: HTH_XRE Location: 303557-303692 bp Feature: gene Location: 304387-304749 bp Feature: domain Description: HTH_31 Location: 304633-304732 bp Feature: domain Description: HTH_31 Location: 304633-304732 bp Feature: gene Location: 305411-306889 bp Feature: domain Description: RVT_N Location: 305486-305723 bp Feature: domain Description: RVT_N Location: 305486-30572 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305783-306440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305783-306440 bp Feature: domain Description: GIIM Note: maturase Location: 306500-306680 bp Feature: domain Description: GIIM Note: maturase Location: 306500-306680 bp Feature: gene Location: 307029-309239 bp Feature: domain Description: YdfJ Location: 307044-308958 bp Feature: domain Description: YdfJ Location: 307044-308958 bp Feature: gene Location: 309653-309940 bp Feature: domain Description: acpP Location: 309689-309896 bp Feature: domain Description: acpP Location: 309689-309896 bp Feature: gene Location: 1094974-1095822 bp Feature: domain Description: HTH_32 Location: 1095070-1095244 bp Feature: domain Description: HTH_32 Location: 1095070-10952 44 bp Feature: domain Description: rve Location: 1095322-1095661 bp Feature: domain Description: rve Location: 109532 2 -1095661 bp Feature: gene Location: 1095973-1096128 bp Feature: gene Location: 1096352-1097785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1096676-1097360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1096676-1097360 bp Feature: domain Description: GIIM Note: maturase Location: 1097429-1097663 bp Feature: domain Description: GIIM Note: maturase Location: 109742 9-1097663 bp Feature: gene Location: 1097877-1098572 bp Feature: gene Location: 1098671-1098877 bp Feature: gene Location: 1124351-1124797 bp Feature: gene Location: 1125180-1126016 bp Feature: domain Description: COG3293 Location: 1125183-1125507 bp Feature: domain Description: COG32 93 Location: 112 5183-112 5507 bp Feature: domain Description: COG3293 Location: 1125537-1125921 bp Feature: domain Description: COG32 93 Location: 112 5537-112 592 1 bp Feature: gene Location: 1126039-1126509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1126381-1126507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 6381-112 6507 bp Feature: gene Location: 1126621-1127400 bp Feature: gene Location: 1127538-1128914 bp Feature: domain Description: Nterm_IS4 Location: 1127601-1127877 bp Feature: domain Description: Nterm_IS4 Location: 112 7601-112 7877 bp Feature: domain Description: DDE_Tnp_1 Location: 1127931-1128576 bp Feature: domain Description: DDE_Tnp_1 Location: 112 7931-112 8576 bp Feature: gene Location: 1982653-1982820 bp Feature: gene Location: 1982823-1983875 bp Feature: domain Description: TPR_12 Location: 1983189-1983324 bp Feature: domain Description: TPR_12 Location: 1983189-198332 4 bp Feature: domain Description: TPR_12 Location: 1983414-1983633 bp Feature: domain Description: TPR_12 Location: 1983414-1983633 bp Feature: gene Location: 1983976-1985001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1983979-1984240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1983979-19842 40 bp Feature: domain Description: GIIM Note: maturase Location: 1984309-1984528 bp Feature: domain Description: GIIM Note: maturase Location: 1984309-198452 8 bp Feature: gene Location: 1985147-1985452 bp Feature: domain Description: PadR Location: 1985198-1985387 bp Feature: domain Description: PadR Location: 1985198-1985387 bp Feature: gene Location: 1985491-1986288 bp Feature: gene Location: 2583353-2583631 bp Feature: domain Description: rve_3 Location: 2583395-2583560 bp Feature: domain Description: rve_3 Location: 2 583395-2 583560 bp Feature: gene Location: 2583658-2584938 bp Feature: domain Description: IS285 Location: 2583769-2584921 bp Feature: domain Description: IS2 85 Location: 2 583769-2 58492 1 bp Feature: gene Location: 2585089-2586558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2585431-2586127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 585431-2 58612 7 bp Feature: domain Description: GIIM Note: maturase Location: 2586199-2586418 bp Feature: domain Description: GIIM Note: maturase Location: 2 586199-2 586418 bp Feature: gene Location: 2587294-2587902 bp Feature: gene Location: 2587602-2590094 bp Feature: domain Description: MglA Location: 2587623-2589072 bp Feature: domain Description: MglA Location: 2 58762 3-2 589072 bp Feature: domain Description: AraH Location: 2589168-2590077 bp Feature: domain Description: AraH Location: 2 589168-2 590077 bp Feature: gene Location: 2625645-2626247 bp Feature: domain Description: HTH_Tnp_4 Location: 2625756-2625894 bp Feature: domain Description: HTH_Tnp_4 Location: 2 62 5756-2 62 5894 bp Feature: domain Description: DDE_Tnp_4 Location: 2625966-2626179 bp Feature: domain Description: DDE_Tnp_4 Location: 2 62 5966-2 62 6179 bp Feature: gene Location: 2626382-2627191 bp Feature: domain Description: COG3293 Location: 2626421-2626709 bp Feature: domain Description: COG32 93 Location: 2 62 642 1-2 62 6709 bp Feature: domain Description: COG3293 Location: 2626751-2627093 bp Feature: domain Description: COG32 93 Location: 2 62 6751-2 62 7093 bp Feature: gene Location: 2627242-2627784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2627248-2627401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 72 48-2 62 7401 bp Feature: domain Description: GIIM Note: maturase Location: 2627491-2627719 bp Feature: domain Description: GIIM Note: maturase Location: 2 62 7491-2 62 7719 bp Feature: gene Location: 2627978-2629288 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2628101-2628368 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2 62 8101-2 62 8368 bp Feature: domain Description: DDE_Tnp_1 Location: 2628515-2629199 bp Feature: domain Description: DDE_Tnp_1 Location: 2 62 8515-2 62 9199 bp Feature: gene Location: 2630605-2631081 bp Feature: domain Description: DDE_Tnp_4 Location: 2630620-2631046 bp Feature: domain Description: DDE_Tnp_4 Location: 2 63062 0-2 631046 bp Feature: gene Location: 3293509-3293658 bp Feature: gene Location: 3293748-3294011 bp Feature: gene Location: 3294010-3295035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3294013-3294274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 94013-32 942 74 bp Feature: domain Description: GIIM Note: maturase Location: 3294343-3294562 bp Feature: domain Description: GIIM Note: maturase Location: 32 94343-32 94562 bp Feature: gene Location: 3295143-3296084 bp Feature: gene Location: 3296129-3296929 bp Feature: domain Description: ElsH Location: 3296135-3296921 bp Feature: domain Description: ElsH Location: 32 96135-32 9692 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), HTH_31 (pfam13560), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YdfJ (COG2409), acpP (PRK00982), HTH_32 (pfam13565), rve (pfam00665), COG3293 (Transposase )
Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), TPR_12 (pfam13424), PadR (pfam03551), rve_3 (pfam13683), IS285 (COG3328), MglA (COG1129), AraH (COG1172), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359)
DDE_Tnp_1_assoc (pfam13808), ElsH (COG3568)