myRT

myRT report for GCA_900093155.1_18090_6_75

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Seq: FLVL01000002.1 (756858 bp)
Overview 1 RT 1: 275698-282566 bp Neighborhood of RT #1 [275698, 282568] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 275698-276426 bp Feature: domain Description: FimC Location: 275731-276409 bp Feature: domain Description: FimC Location: 275731 -276409 bp Feature: gene Location: 276458-279067 bp Feature: domain Description: FimD Location: 276515-279056 bp Feature: domain Description: FimD Location: 27651 5-279056 bp Feature: gene Location: 279067-281145 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 279475-279919 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 279475-27991 9 bp Feature: gene Location: 281202-281642 bp Feature: domain Description: Integrase_1 Location: 281208-281424 bp Feature: domain Description: Integrase_1 Location: 281 208-281 424 bp Feature: gene Location: 281903-282568 bp Feature: domain Description: INT_P4_C Location: 282008-282566 bp Feature: domain Description: INT_P4_C Location: 282008-282566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: FLVL01000016.1 (24423 bp)
Overview 1 RT 1: 13969-18994 bp Neighborhood of RT #1 [13969, 18999] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 13969-15240 bp Feature: domain Description: umuC Location: 13972-15232 bp Feature: domain Description: umuC Location: 13972 -152 32 bp Feature: gene Location: 15240-16052 bp Feature: domain Description: PRK10276 Location: 15672-16035 bp Feature: domain Description: PRK102 76 Location: 15672 -16035 bp Feature: gene Location: 16077-17564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16482-17172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16482 -17172 bp Feature: gene Location: 17633-17902 bp Feature: gene Location: 18034-18999 bp Feature: domain Description: ArdC Location: 18160-18994 bp Feature: domain Description: ArdC Location: 18160-18994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227)

Seq: FLVL01000003.1 (543600 bp)
Overview 1 RT 1: 59071-63073 bp Neighborhood of RT #1 [59071, 65097] RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like PRK04247 RVT-UG5 Feature: gene Location: 59071-60789 bp Feature: domain Description: RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like Location: 59398-59932 bp Feature: domain Description: RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like Location: 593 98-5993 2 bp Feature: domain Description: RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like Location: 60382-60760 bp Feature: domain Description: RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like Location: 603 82-60760 bp Feature: gene Location: 60800-61900 bp Feature: domain Description: PRK04247 Location: 60863-61094 bp Feature: domain Description: PRK04247 Location: 60863 -61094 bp Feature: gene Location: 62080-65097 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 62578-63073 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 62578-63 073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_Ppo21ORF8840P_TRD1-CR1_like (cd17293), PRK04247 (endonuclease NucS), RVT-UG5