myRT

myRT report for GCA_900093565.1_PRJEB14722

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Seq: LT600329.1 (1970568 bp)
Overview 1 RT 1: 263341-269130 bp 2 RT 2: 1050383-1056400 bp 3 RT 3: 1451783-1456619 bp 4 RT 4: 1665722-1670868 bp Neighborhood of RT #1 [263341, 269144] Y1_Tnp InsQ InsQ RVT-GII GIIM Arylsulfotran_2 DUF1934 Neighborhood of RT #2 [1050383, 1056465] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PhdYeFM_antitox RVT-AbiK HEPN_RiboL-PSP Neighborhood of RT #3 [1451783, 1456648] TetR_C_8 DHAK_reg RVT-GII GIIM PRX_Atyp2cys TrmA Neighborhood of RT #4 [1665722, 1670870] COG2865 RVT-GII group_II_RT_mat guaA Feature: gene Location: 263341-263589 bp Feature: domain Description: Y1_Tnp Location: 263347-263578 bp Feature: domain Description: Y1 _Tnp Location: 263347-263578 bp Feature: gene Location: 263589-264764 bp Feature: domain Description: InsQ Location: 263598-264267 bp Feature: domain Description: InsQ Location: 263598-264267 bp Feature: domain Description: InsQ Location: 264333-264753 bp Feature: domain Description: InsQ Location: 264333-264753 bp Feature: gene Location: 264936-265931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264942-265485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264942-265485 bp Feature: domain Description: GIIM Note: maturase Location: 265539-265767 bp Feature: domain Description: GIIM Note: maturase Location: 265539-265767 bp Feature: gene Location: 266031-267443 bp Feature: domain Description: Arylsulfotran_2 Location: 266502-267222 bp Feature: domain Description: Arylsulfotran_2 Location: 266502-267222 bp Feature: gene Location: 268824-269144 bp Feature: domain Description: DUF1934 Location: 268830-269130 bp Feature: domain Description: DUF1 934 Location: 268830-2691 30 bp Feature: gene Location: 1050383-1051912 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1050470-1050689 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 050470-1 050689 bp Feature: domain Description: zf-IS66 Location: 1050713-1050842 bp Feature: domain Description: zf-IS66 Location: 1 05071 3-1 050842 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1050905-1051748 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 050905-1 051 748 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1051769-1051880 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 051 769-1 051 880 bp Feature: gene Location: 1051991-1052128 bp Feature: domain Description: PhdYeFM_antitox Location: 1052000-1052126 bp Feature: domain Description: PhdYeFM_antitox Location: 1 052000-1 0521 26 bp Feature: gene Location: 1052605-1054539 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 1053157-1053550 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 1 0531 57-1 053550 bp Feature: gene Location: 1054625-1055386 bp Feature: gene Location: 1055713-1056465 bp Feature: domain Description: HEPN_RiboL-PSP Location: 1055929-1056400 bp Feature: domain Description: HEPN_RiboL-PSP Location: 1 055929-1 056400 bp Feature: gene Location: 1451783-1452139 bp Feature: domain Description: TetR_C_8 Location: 1451804-1452071 bp Feature: domain Description: TetR_C_8 Location: 1 451 804-1 452071 bp Feature: gene Location: 1452130-1452402 bp Feature: domain Description: DHAK_reg Location: 1452148-1452316 bp Feature: domain Description: DHAK_reg Location: 1 4521 48-1 45231 6 bp Feature: gene Location: 1452609-1453991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1452927-1453545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 452927-1 453545 bp Feature: domain Description: GIIM Note: maturase Location: 1453599-1453827 bp Feature: domain Description: GIIM Note: maturase Location: 1 453599-1 453827 bp Feature: gene Location: 1454479-1454973 bp Feature: domain Description: PRX_Atyp2cys Location: 1454536-1454953 bp Feature: domain Description: PRX_Atyp2cys Location: 1 454536-1 454953 bp Feature: gene Location: 1455209-1456648 bp Feature: domain Description: TrmA Location: 1455299-1456619 bp Feature: domain Description: TrmA Location: 1 455299-1 45661 9 bp Feature: gene Location: 1665722-1666237 bp Feature: gene Location: 1666551-1668077 bp Feature: domain Description: COG2865 Location: 1666560-1668033 bp Feature: domain Description: COG2865 Location: 1 666560-1 668033 bp Feature: gene Location: 1668343-1668627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1668349-1668568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 668349-1 668568 bp Feature: gene Location: 1668634-1668858 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1668646-1668850 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 668646-1 668850 bp Feature: gene Location: 1669254-1670870 bp Feature: domain Description: guaA Location: 1669347-1670868 bp Feature: domain Description: guaA Location: 1 669347-1 670868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), InsQ (COG0675), RVT-GII, GIIM (pfam08388), Arylsulfotran_2 (pfam14269), DUF1934 (pfam09148), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
PhdYeFM_antitox (pfam02604), RVT-AbiK, HEPN_RiboL-PSP (pfam18735), TetR_C_8 (pfam14278), DHAK_reg (TIGR02366), PRX_Atyp2cys (cd03014), TrmA (COG2265), COG2865 (Predicted transcriptional regulator, contains HTH domain ), group_II_RT_mat (TIGR04416), guaA (PRK00074)

Seq: LT600334.1 (1911 bp)
Overview 1 RT 1: 92-1890 bp Neighborhood of RT #1 [92, 1890] RVT-GII GIIM Feature: gene Location: 92-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410-1028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410-102 8 bp Feature: domain Description: GIIM Note: maturase Location: 1082-1310 bp Feature: domain Description: GIIM Note: maturase Location: 1082 -1310 bp Feature: gene Location: 1669-1890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)