myRT

myRT report for GCA_900093835.1_scaffolds_20151360

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Seq: FLZB01000045.1 (14899 bp)
Overview 1 RT 1: 1711-4867 bp Neighborhood of RT #1 [1711, 4884] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Feature: gene Location: 1711-2088 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1714-2086 bp Feature: domain Description: DDE_Tnp_IS1 Location: 1 71 4-2086 bp Feature: gene Location: 2133-2408 bp Feature: domain Description: InsA Location: 2136-2400 bp Feature: domain Description: InsA Location: 21 36-2400 bp Feature: gene Location: 2560-3570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566-3178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566-31 78 bp Feature: gene Location: 3682-4047 bp Feature: gene Location: 4201-4884 bp Feature: domain Description: PRK10276 Location: 4504-4867 bp Feature: domain Description: PRK1 0276 Location: 4504-4867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: FLZB01000004.1 (256795 bp)
Overview 1 RT 1: 212964-217809 bp 2 RT 2: 242825-248517 bp Neighborhood of RT #1 [212964, 217809] DUF3987 Inovirus_Gp2 RVT-GII Neighborhood of RT #2 [242825, 248975] InsE PHA02517 RVT-GII GIIM PHA02517 HsdM Feature: gene Location: 212964-214397 bp Feature: domain Description: DUF3987 Location: 213057-214134 bp Feature: domain Description: DUF3987 Location: 2 13057-2 14134 bp Feature: gene Location: 215255-215818 bp Feature: domain Description: Inovirus_Gp2 Location: 215312-215753 bp Feature: domain Description: Inovirus_Gp2 Location: 2 15312 -2 15753 bp Feature: gene Location: 216144-217307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216258-216945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 162 58-2 16945 bp Feature: gene Location: 217294-217602 bp Feature: gene Location: 217636-217809 bp Feature: gene Location: 242825-243151 bp Feature: domain Description: InsE Location: 242828-243149 bp Feature: domain Description: InsE Location: 2 42 82 8-2 43149 bp Feature: gene Location: 243151-243630 bp Feature: domain Description: PHA02517 Location: 243211-243565 bp Feature: domain Description: PHA02 517 Location: 2 432 11-2 43565 bp Feature: gene Location: 244399-245745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244495-245227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 44495-2 452 2 7 bp Feature: domain Description: GIIM Note: maturase Location: 245302-245500 bp Feature: domain Description: GIIM Note: maturase Location: 2 45302 -2 45500 bp Feature: gene Location: 245910-246293 bp Feature: domain Description: PHA02517 Location: 245913-246288 bp Feature: domain Description: PHA02 517 Location: 2 45913-2 462 88 bp Feature: gene Location: 246516-248975 bp Feature: domain Description: HsdM Location: 246573-248517 bp Feature: domain Description: HsdM Location: 2 46573-2 48517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), HsdM (COG0286)

Seq: FLZB01000002.1 (257618 bp)
Overview 1 RT 1: 1-5214 bp Neighborhood of RT #1 [1, 5216] Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 1-159 bp Feature: gene Location: 159-743 bp Feature: domain Description: Caudo_TAP Location: 375-732 bp Feature: domain Description: Caudo_TAP Location: 3 75-73 2 bp Feature: gene Location: 1188-2792 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1479-2070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1479-2070 bp Feature: domain Description: TIR_2 Location: 2397-2730 bp Feature: domain Description: TIR_2 Location: 23 97-273 0 bp Feature: gene Location: 3150-3410 bp Feature: domain Description: PRK10597 Location: 3153-3393 bp Feature: domain Description: PRK10597 Location: 3 153 -3 3 93 bp Feature: gene Location: 3630-5216 bp Feature: domain Description: prfC Location: 3648-5214 bp Feature: domain Description: prfC Location: 3 648-5214 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: FLZB01000012.1 (183720 bp)
Overview 1 RT 1: 1-3221 bp Neighborhood of RT #1 [1, 3226] Caudo_TAP RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 1-159 bp Feature: gene Location: 159-743 bp Feature: domain Description: Caudo_TAP Location: 375-732 bp Feature: domain Description: Caudo_TAP Location: 375-732 bp Feature: gene Location: 856-2226 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1084-1690 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1084 -1690 bp Feature: gene Location: 2204-2755 bp Feature: domain Description: SLATT_5 Location: 2210-2726 bp Feature: domain Description: SLATT_5 Location: 2210-2726 bp Feature: gene Location: 2978-3226 bp Feature: domain Description: PRK10597 Location: 2981-3221 bp Feature: domain Description: PRK10597 Location: 2981-3221 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: FLZB01000455.1 (236 bp)
Overview 1 RT 1: 1-235 bp Neighborhood of RT #1 [1, 234] RVT-Retrons Feature: gene Location: 1-234 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7-235 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7-235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons