myRT

myRT report for GCA_900093845.1_scaffolds_20160103

Download annotations/find similar RTs

Seq: FLZA01000002.1 (231966 bp)
Overview 1 RT 1: 213753-218598 bp Neighborhood of RT #1 [213753, 218598] DUF3987 Inovirus_Gp2 RVT-GII Feature: gene Location: 213753-215186 bp Feature: domain Description: DUF3987 Location: 213846-214923 bp Feature: domain Description: DUF3987 Location: 21 3846-21 4923 bp Feature: gene Location: 216044-216607 bp Feature: domain Description: Inovirus_Gp2 Location: 216101-216542 bp Feature: domain Description: Inovirus_Gp2 Location: 21 61 01 -21 6542 bp Feature: gene Location: 216933-218096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217047-217734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7047-21 7734 bp Feature: gene Location: 218083-218391 bp Feature: gene Location: 218425-218598 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII

Seq: FLZA01000066.1 (12355 bp)
Overview 1 RT 1: 130-5822 bp Neighborhood of RT #1 [130, 6280] InsE PHA02517 RVT-GII GIIM PHA02517 HsdM Feature: gene Location: 130-456 bp Feature: domain Description: InsE Location: 133-454 bp Feature: domain Description: InsE Location: 133-454 bp Feature: gene Location: 456-935 bp Feature: domain Description: PHA02517 Location: 516-870 bp Feature: domain Description: PHA02 517 Location: 516-870 bp Feature: gene Location: 1704-3050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1800-2532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1800-2 532 bp Feature: domain Description: GIIM Note: maturase Location: 2607-2805 bp Feature: domain Description: GIIM Note: maturase Location: 2 607-2 805 bp Feature: gene Location: 3245-3598 bp Feature: domain Description: PHA02517 Location: 3248-3593 bp Feature: domain Description: PHA02 517 Location: 32 48-3593 bp Feature: gene Location: 3821-6280 bp Feature: domain Description: HsdM Location: 3878-5822 bp Feature: domain Description: HsdM Location: 3878-582 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HsdM (COG0286)

Seq: FLZA01000055.1 (18033 bp)
Overview 1 RT 1: 934-4681 bp Neighborhood of RT #1 [934, 4908] HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 934-1395 bp Feature: domain Description: HTH_XRE Location: 964-1132 bp Feature: domain Description: HTH_XRE Location: 964-113 2 bp Feature: gene Location: 1635-2132 bp Feature: gene Location: 2269-3978 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2422-3019 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2422-3 019 bp Feature: gene Location: 4012-4194 bp Feature: gene Location: 4243-4908 bp Feature: domain Description: Resolvase Location: 4264-4681 bp Feature: domain Description: Resolvase Location: 4264-4681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)

Seq: FLZA01000028.1 (46372 bp)
Overview 1 RT 1: 580-6468 bp Neighborhood of RT #1 [580, 6485] PRK09692 RVT-UG7 Psu Feature: gene Location: 580-1359 bp Feature: gene Location: 2068-3252 bp Feature: domain Description: PRK09692 Location: 2074-3229 bp Feature: domain Description: PRK09692 Location: 2074 -3229 bp Feature: gene Location: 3245-4873 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3653-4082 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3653-4 082 bp Feature: gene Location: 4870-5610 bp Feature: gene Location: 5913-6485 bp Feature: domain Description: Psu Location: 5931-6468 bp Feature: domain Description: Psu Location: 5931-64 68 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: FLZA01000212.1 (254 bp)
Overview 1 RT 1: 3-207 bp Neighborhood of RT #1 [3, 230] RVT-UNC Feature: gene Location: 3-230 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 45-207 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 45 -207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-UG23/RVT-UG7/RVT-UG28(RVT-UNC)