myRT

myRT report for GCA_900093885.1_scaffolds_20151359

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Seq: FLYT01000002.1 (257133 bp)
Overview 1 RT 1: 2-4730 bp Neighborhood of RT #1 [2, 4732] Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-259 bp Feature: domain Description: Caudo_TAP Location: 5-248 bp Feature: domain Description: Caudo_TAP Location: 5-248 bp Feature: gene Location: 704-2308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 995-1586 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 995-1 586 bp Feature: domain Description: TIR_2 Location: 1913-2246 bp Feature: domain Description: TIR_2 Location: 1 91 3-2246 bp Feature: gene Location: 2666-2926 bp Feature: domain Description: PRK10597 Location: 2669-2909 bp Feature: domain Description: PRK1 0597 Location: 2669-2909 bp Feature: gene Location: 3146-4732 bp Feature: domain Description: prfC Location: 3164-4730 bp Feature: domain Description: prfC Location: 31 64-4730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: FLYT01000044.1 (14782 bp)
Overview 1 RT 1: 9899-13070 bp Neighborhood of RT #1 [9899, 13072] PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 9899-10582 bp Feature: domain Description: PRK10276 Location: 10202-10565 bp Feature: domain Description: PRK102 76 Location: 102 02 -10565 bp Feature: gene Location: 10736-11101 bp Feature: gene Location: 11213-12223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11219-11831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 19-11831 bp Feature: gene Location: 12375-12650 bp Feature: domain Description: InsA Location: 12378-12642 bp Feature: domain Description: InsA Location: 12 378-12 642 bp Feature: gene Location: 12569-13072 bp Feature: domain Description: DDE_Tnp_IS1 Location: 12680-13070 bp Feature: domain Description: DDE_Tnp_IS1 Location: 12 680-13070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: FLYT01000012.1 (183238 bp)
Overview 1 RT 1: 2-2737 bp Neighborhood of RT #1 [2, 2742] Caudo_TAP RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 2-259 bp Feature: domain Description: Caudo_TAP Location: 5-248 bp Feature: domain Description: Caudo_TAP Location: 5-248 bp Feature: gene Location: 372-1742 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 600-1206 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 600-1206 bp Feature: gene Location: 1720-2271 bp Feature: domain Description: SLATT_5 Location: 1726-2242 bp Feature: domain Description: SLATT_5 Location: 1726-2242 bp Feature: gene Location: 2494-2742 bp Feature: domain Description: PRK10597 Location: 2497-2737 bp Feature: domain Description: PRK10597 Location: 2497-273 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: FLYT01000004.1 (256795 bp)
Overview 1 RT 1: 212964-217809 bp 2 RT 2: 242825-248517 bp Neighborhood of RT #1 [212964, 217809] DUF3987 Inovirus_Gp2 RVT-GII Neighborhood of RT #2 [242825, 248975] InsE PHA02517 RVT-GII GIIM PHA02517 HsdM Feature: gene Location: 212964-214397 bp Feature: domain Description: DUF3987 Location: 213057-214134 bp Feature: domain Description: DUF3987 Location: 213057-214 134 bp Feature: gene Location: 215255-215818 bp Feature: domain Description: Inovirus_Gp2 Location: 215312-215753 bp Feature: domain Description: Inovirus_Gp2 Location: 215312-215753 bp Feature: gene Location: 216144-217307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216258-216945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216258-21694 5 bp Feature: gene Location: 217294-217602 bp Feature: gene Location: 217636-217809 bp Feature: gene Location: 242825-243151 bp Feature: domain Description: InsE Location: 242828-243149 bp Feature: domain Description: InsE Location: 24 2828-24 314 9 bp Feature: gene Location: 243151-243630 bp Feature: domain Description: PHA02517 Location: 243211-243565 bp Feature: domain Description: PHA02517 Location: 24 3211-24 3565 bp Feature: gene Location: 244399-245745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244495-245227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 4 4 95-24 5227 bp Feature: domain Description: GIIM Note: maturase Location: 245302-245500 bp Feature: domain Description: GIIM Note: maturase Location: 24 5302-24 5500 bp Feature: gene Location: 245910-246293 bp Feature: domain Description: PHA02517 Location: 245913-246288 bp Feature: domain Description: PHA02517 Location: 24 5913-24 6288 bp Feature: gene Location: 246516-248975 bp Feature: domain Description: HsdM Location: 246573-248517 bp Feature: domain Description: HsdM Location: 24 6573-24 8517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), HsdM (COG0286)