myRT

myRT report for GCA_900093935.1_scaffolds_20151018

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Seq: FLZK01000001.1 (267194 bp)
Overview 1 RT 1: 165048-167468 bp Neighborhood of RT #1 [165048, 167468] RVT-Retrons HTH_XRE Feature: gene Location: 165048-165242 bp Feature: gene Location: 165292-165678 bp Feature: gene Location: 165803-166753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 165983-166526 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 65983-1 66526 bp Feature: gene Location: 166731-167051 bp Feature: domain Description: HTH_XRE Location: 166755-166920 bp Feature: domain Description: HTH_XRE Location: 1 66755-1 66920 bp Feature: gene Location: 167076-167468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: FLZK01000002.1 (232158 bp)
Overview 1 RT 1: 213831-218676 bp Neighborhood of RT #1 [213831, 218676] DUF3987 Inovirus_Gp2 RVT-GII Feature: gene Location: 213831-215264 bp Feature: domain Description: DUF3987 Location: 213924-215001 bp Feature: domain Description: DUF3987 Location: 2 1392 4-2 15001 bp Feature: gene Location: 216122-216685 bp Feature: domain Description: Inovirus_Gp2 Location: 216179-216620 bp Feature: domain Description: Inovirus_Gp2 Location: 2 16179-2 1662 0 bp Feature: gene Location: 217011-218174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217125-217812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1712 5-2 17812 bp Feature: gene Location: 218161-218469 bp Feature: gene Location: 218503-218676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII

Seq: FLZK01000069.1 (12355 bp)
Overview 1 RT 1: 130-5822 bp Neighborhood of RT #1 [130, 6280] InsE PHA02517 RVT-GII GIIM PHA02517 HsdM Feature: gene Location: 130-456 bp Feature: domain Description: InsE Location: 133-454 bp Feature: domain Description: InsE Location: 13 3 -454 bp Feature: gene Location: 456-935 bp Feature: domain Description: PHA02517 Location: 516-870 bp Feature: domain Description: PHA02517 Location: 516-870 bp Feature: gene Location: 1704-3050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1800-2532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1800-253 2 bp Feature: domain Description: GIIM Note: maturase Location: 2607-2805 bp Feature: domain Description: GIIM Note: maturase Location: 2607-2805 bp Feature: gene Location: 3245-3598 bp Feature: domain Description: PHA02517 Location: 3248-3593 bp Feature: domain Description: PHA02517 Location: 3 248-3 593 bp Feature: gene Location: 3821-6280 bp Feature: domain Description: HsdM Location: 3878-5822 bp Feature: domain Description: HsdM Location: 3 878-5822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HsdM (COG0286)

Seq: FLZK01000024.1 (63325 bp)
Overview 1 RT 1: 40513-49973 bp Neighborhood of RT #1 [40513, 50200] RVT-UG7 PRK09692 DUF4062 HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 40513-40653 bp Feature: gene Location: 40763-41503 bp Feature: gene Location: 41500-43128 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 41908-42337 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4 1908-4 2337 bp Feature: gene Location: 43121-44305 bp Feature: domain Description: PRK09692 Location: 43127-44282 bp Feature: domain Description: PRK09692 Location: 4 3127-4 4 282 bp Feature: gene Location: 45014-46195 bp Feature: domain Description: DUF4062 Location: 45029-45356 bp Feature: domain Description: DUF4 062 Location: 4 5029-4 5356 bp Feature: gene Location: 46226-46687 bp Feature: domain Description: HTH_XRE Location: 46256-46424 bp Feature: domain Description: HTH_XRE Location: 4 6256-4 64 24 bp Feature: gene Location: 46927-47424 bp Feature: gene Location: 47561-49267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47711-48308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 7711-4 8308 bp Feature: gene Location: 49304-49486 bp Feature: gene Location: 49535-50200 bp Feature: domain Description: Resolvase Location: 49556-49973 bp Feature: domain Description: Resolvase Location: 4 9556-4 9973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), DUF4062 (pfam13271), HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)