myRT

myRT report for GCA_900094005.1_scaffolds_20160006

Download annotations/find similar RTs

Seq: FLYS01000056.1 (17597 bp)
Overview 1 RT 1: 498-4245 bp Neighborhood of RT #1 [498, 4472] HTH_XRE RVT-Retrons Resolvase Feature: gene Location: 498-959 bp Feature: domain Description: HTH_XRE Location: 528-696 bp Feature: domain Description: HTH_XRE Location: 528-696 bp Feature: gene Location: 1199-1696 bp Feature: gene Location: 1833-3539 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1983-2580 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 983-2580 bp Feature: gene Location: 3576-3758 bp Feature: gene Location: 3807-4472 bp Feature: domain Description: Resolvase Location: 3828-4245 bp Feature: domain Description: Resolvase Location: 3828-4245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, Resolvase (smart00857)

Seq: FLYS01000031.1 (45451 bp)
Overview 1 RT 1: 95-5983 bp Neighborhood of RT #1 [95, 6000] PRK09692 RVT-UG7 Psu Feature: gene Location: 95-874 bp Feature: gene Location: 1583-2767 bp Feature: domain Description: PRK09692 Location: 1589-2744 bp Feature: domain Description: PRK09692 Location: 1589-2 744 bp Feature: gene Location: 2760-4388 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3168-3597 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3168-3597 bp Feature: gene Location: 4385-5125 bp Feature: gene Location: 5428-6000 bp Feature: domain Description: Psu Location: 5446-5983 bp Feature: domain Description: Psu Location: 5446-5983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: FLYS01000001.1 (255748 bp)
Overview 1 RT 1: 213662-218507 bp 2 RT 2: 243523-249215 bp Neighborhood of RT #1 [213662, 218507] DUF3987 Inovirus_Gp2 RVT-GII Neighborhood of RT #2 [243523, 249673] InsE PHA02517 RVT-GII GIIM PHA02517 HsdM Feature: gene Location: 213662-215095 bp Feature: domain Description: DUF3987 Location: 213755-214832 bp Feature: domain Description: DUF3 987 Location: 213 755-21483 2 bp Feature: gene Location: 215953-216516 bp Feature: domain Description: Inovirus_Gp2 Location: 216010-216451 bp Feature: domain Description: Inovirus_Gp2 Location: 216010-216451 bp Feature: gene Location: 216842-218005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216956-217643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216956-217643 bp Feature: gene Location: 217992-218300 bp Feature: gene Location: 218334-218507 bp Feature: gene Location: 243523-243849 bp Feature: domain Description: InsE Location: 243526-243847 bp Feature: domain Description: InsE Location: 243 526-243 847 bp Feature: gene Location: 243849-244328 bp Feature: domain Description: PHA02517 Location: 243909-244263 bp Feature: domain Description: PHA02517 Location: 243 909-244263 bp Feature: gene Location: 245097-246443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245193-245925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245193 -245925 bp Feature: domain Description: GIIM Note: maturase Location: 246000-246198 bp Feature: domain Description: GIIM Note: maturase Location: 246000-246198 bp Feature: gene Location: 246608-246991 bp Feature: domain Description: PHA02517 Location: 246611-246986 bp Feature: domain Description: PHA02517 Location: 246611-246986 bp Feature: gene Location: 247214-249673 bp Feature: domain Description: HsdM Location: 247271-249215 bp Feature: domain Description: HsdM Location: 247271-249215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), HsdM (COG0286)