myRT

myRT report for GCA_900094565.1_IMG-taxon_2615840626_annotated_assembly

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Seq: FMAF01000074.1 (1892 bp)
Overview 1 RT 1: 218-1719 bp Neighborhood of RT #1 [218, 1814] RVT-GII GIIM Feature: gene Location: 218-346 bp Feature: gene Location: 552-1814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 768-1422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 768-1 422 bp Feature: domain Description: GIIM Note: maturase Location: 1509-1719 bp Feature: domain Description: GIIM Note: maturase Location: 1 509-1 71 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FMAF01000040.1 (42922 bp)
Overview 1 RT 1: 29436-34299 bp 2 RT 2: 40550-42919 bp Neighborhood of RT #1 [29436, 34299] DUF4263 SLATT_5 RVT-UG17 HTH_29 rve Neighborhood of RT #2 [40550, 42919] RVT-GII GIIM Feature: gene Location: 29436-29723 bp Feature: domain Description: DUF4263 Location: 29442-29688 bp Feature: domain Description: DUF42 63 Location: 2 9442 -2 9688 bp Feature: gene Location: 30016-30594 bp Feature: domain Description: SLATT_5 Location: 30043-30577 bp Feature: domain Description: SLATT_5 Location: 30043-30577 bp Feature: gene Location: 30600-31916 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 30828-31410 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3082 8-31410 bp Feature: gene Location: 32134-33555 bp Feature: domain Description: HTH_29 Location: 32176-32359 bp Feature: domain Description: HTH_2 9 Location: 32 176-32 359 bp Feature: domain Description: rve Location: 32560-32926 bp Feature: domain Description: rve Location: 32 560-32 92 6 bp Feature: gene Location: 33562-34299 bp Feature: gene Location: 40550-40966 bp Feature: gene Location: 41069-41212 bp Feature: gene Location: 41393-42715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41681-42338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41681-42 338 bp Feature: domain Description: GIIM Note: maturase Location: 42407-42620 bp Feature: domain Description: GIIM Note: maturase Location: 42 407-42 62 0 bp Feature: gene Location: 42734-42919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4263 (pfam14082), SLATT_5 (pfam18160), RVT-UG17, HTH_29 (pfam13551), rve (pfam00665), RVT-GII, GIIM (pfam08388)

Seq: FMAF01000063.1 (9967 bp)
Overview 1 RT 1: 4937-8950 bp Neighborhood of RT #1 [4937, 9015] RVT-GII GIIM AccC Feature: gene Location: 4937-5227 bp Feature: gene Location: 5466-5741 bp Feature: gene Location: 5958-7208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6174-6819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6174-6819 bp Feature: domain Description: GIIM Note: maturase Location: 6906-7116 bp Feature: domain Description: GIIM Note: maturase Location: 6906-7116 bp Feature: gene Location: 7260-7493 bp Feature: gene Location: 7726-9015 bp Feature: domain Description: AccC Location: 7744-8950 bp Feature: domain Description: AccC Location: 7744-8950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AccC (COG0439)

Seq: FMAF01000026.1 (89275 bp)
Overview 1 RT 1: 57342-60851 bp Neighborhood of RT #1 [57342, 60851] HU_IHF RVT_N RVT-GII GIIM COG5489 Feature: gene Location: 57342-57512 bp Feature: domain Description: HU_IHF Location: 57357-57510 bp Feature: domain Description: HU_IHF Location: 57357-57510 bp Feature: gene Location: 57724-57864 bp Feature: gene Location: 58120-59640 bp Feature: domain Description: RVT_N Location: 58171-58399 bp Feature: domain Description: RVT_N Location: 58171-58399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58459-59098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584 59-59098 bp Feature: domain Description: GIIM Note: maturase Location: 59155-59383 bp Feature: domain Description: GIIM Note: maturase Location: 59155-59383 bp Feature: gene Location: 59926-60234 bp Feature: domain Description: COG5489 Location: 59929-60232 bp Feature: domain Description: COG54 89 Location: 59929-60232 bp Feature: gene Location: 60375-60851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU_IHF (cl00257), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG5489 (Uncharacterized conserved protein, DUF736 family )