myRT

myRT report for GCA_900096675.1_R.p.6600698_assembly

Download annotations/find similar RTs

Seq: FMJR01000007.1 (57121 bp)
Overview 1 RT 1: 33635-39172 bp Neighborhood of RT #1 [33635, 39177] MATE_yoeA_like RVT-GII UgpE LplB Feature: gene Location: 33635-34972 bp Feature: domain Description: MATE_yoeA_like Location: 33671-34946 bp Feature: domain Description: MATE_yoeA_like Location: 33671 -34946 bp Feature: gene Location: 36307-36495 bp Feature: gene Location: 37063-37203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37069-37201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37069-37201 bp Feature: gene Location: 37357-38253 bp Feature: domain Description: UgpE Location: 37399-38248 bp Feature: domain Description: UgpE Location: 37399-38248 bp Feature: gene Location: 38266-39177 bp Feature: domain Description: LplB Location: 38281-39172 bp Feature: domain Description: LplB Location: 38281 -391 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_yoeA_like (cd13138), RVT-GII, UgpE (COG0395), LplB (COG4209)

Seq: FMJR01000025.1 (31683 bp)
Overview 1 RT 1: 8422-17521 bp Neighborhood of RT #1 [8422, 17526] Laminin_G_3 BID_2 Big_4 Glyco_hydro_127 FIVAR FIVAR BID_2 BID_2 Alpha_L_fucos RVT_N RVT-GII GIIM UgpE Feature: gene Location: 8422-13662 bp Feature: domain Description: Laminin_G_3 Location: 8932-9397 bp Feature: domain Description: Laminin_G_3 Location: 8932 -9397 bp Feature: domain Description: BID_2 Location: 9424-9616 bp Feature: domain Description: BID_2 Location: 942 4-9616 bp Feature: domain Description: Big_4 Location: 9979-10141 bp Feature: domain Description: Big_4 Location: 9979-10141 bp Feature: domain Description: Glyco_hydro_127 Location: 10255-11875 bp Feature: domain Description: Glyco_hydro_12 7 Location: 102 55-11875 bp Feature: domain Description: FIVAR Location: 12802-12982 bp Feature: domain Description: FIVAR Location: 12 802 -12 982 bp Feature: domain Description: FIVAR Location: 13054-13198 bp Feature: domain Description: FIVAR Location: 13054-13198 bp Feature: domain Description: BID_2 Location: 13255-13387 bp Feature: domain Description: BID_2 Location: 132 55-13387 bp Feature: domain Description: BID_2 Location: 13435-13636 bp Feature: domain Description: BID_2 Location: 13435-13636 bp Feature: gene Location: 13777-14184 bp Feature: domain Description: Alpha_L_fucos Location: 13795-14023 bp Feature: domain Description: Alpha_L_fucos Location: 13795-1402 3 bp Feature: gene Location: 14389-16098 bp Feature: domain Description: RVT_N Location: 14503-14725 bp Feature: domain Description: RVT_N Location: 14503-1472 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14770-15424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14770-1542 4 bp Feature: domain Description: GIIM Note: maturase Location: 15475-15709 bp Feature: domain Description: GIIM Note: maturase Location: 15475-15709 bp Feature: gene Location: 16352-16564 bp Feature: gene Location: 16702-17526 bp Feature: domain Description: UgpE Location: 16714-17521 bp Feature: domain Description: UgpE Location: 16714-1752 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), BID_2 (smart00635), Big_4 (pfam07532), Glyco_hydro_127 (pfam07944), FIVAR (pfam07554), Alpha_L_fucos (smart00812), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), UgpE (COG0395)

Seq: FMJR01000027.1 (50442 bp)
Overview 1 RT 1: 32386-38788 bp Neighborhood of RT #1 [32386, 38793] FtsX YbbP FtsX RVT-Retrons LPLAT_AGPAT-like PRK14508 Feature: gene Location: 32386-34749 bp Feature: domain Description: FtsX Location: 33271-33529 bp Feature: domain Description: FtsX Location: 3 3 271-3 3 529 bp Feature: domain Description: YbbP Location: 33967-34081 bp Feature: domain Description: YbbP Location: 3 3 967-3 4081 bp Feature: domain Description: FtsX Location: 34444-34729 bp Feature: domain Description: FtsX Location: 3 4444-3 4729 bp Feature: gene Location: 34796-34960 bp Feature: gene Location: 35271-36257 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35436-35991 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 543 6-3 5991 bp Feature: gene Location: 36359-37102 bp Feature: domain Description: LPLAT_AGPAT-like Location: 36506-37025 bp Feature: domain Description: LPLAT_AGPAT-like Location: 3 6506-3 7025 bp Feature: gene Location: 37144-38793 bp Feature: domain Description: PRK14508 Location: 37303-38788 bp Feature: domain Description: PRK14508 Location: 3 73 03 -3 8788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsX (pfam02687), YbbP (COG3127), RVT-Retrons, LPLAT_AGPAT-like (cd07989), PRK14508 (4-alpha-glucanotransferase; Provisional)

Seq: FMJR01000133.1 (252814 bp)
Overview 1 RT 1: 222861-230347 bp Neighborhood of RT #1 [222861, 230364] UgpE RVT-GII GIIM PBP2_AlgQ_like_3 YicI CBM6_cellulase-like Feature: gene Location: 222861-223769 bp Feature: domain Description: UgpE Location: 222885-223764 bp Feature: domain Description: UgpE Location: 222885-223764 bp Feature: gene Location: 224014-224217 bp Feature: gene Location: 224346-225566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224523-225213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224 523-225213 bp Feature: domain Description: GIIM Note: maturase Location: 225294-225498 bp Feature: domain Description: GIIM Note: maturase Location: 225294 -2254 98 bp Feature: gene Location: 225692-227431 bp Feature: domain Description: PBP2_AlgQ_like_3 Location: 225830-227375 bp Feature: domain Description: PBP2_AlgQ_like_3 Location: 225830-227375 bp Feature: gene Location: 227464-230364 bp Feature: domain Description: YicI Location: 227713-229618 bp Feature: domain Description: YicI Location: 227713-229618 bp Feature: domain Description: CBM6_cellulase-like Location: 229942-230347 bp Feature: domain Description: CBM6_cellulase-like Location: 22994 2-23034 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), RVT-GII, GIIM (pfam08388), PBP2_AlgQ_like_3 (cd13582), YicI (COG1501), CBM6_cellulase-like (cd04080)

Seq: FMJR01000038.1 (15732 bp)
Overview 1 RT 1: 11742-15594 bp Neighborhood of RT #1 [11742, 15731] ABC2_membrane RVT-GII Intron_maturas2 Feature: gene Location: 11742-12491 bp Feature: domain Description: ABC2_membrane Location: 11754-12375 bp Feature: domain Description: ABC2_membrane Location: 1175 4-12375 bp Feature: gene Location: 13431-13610 bp Feature: gene Location: 14289-15731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14619-15357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14619-15 35 7 bp Feature: domain Description: Intron_maturas2 Location: 15405-15594 bp Feature: domain Description: Intron_maturas2 Location: 15 405 -15 5 94 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane (pfam01061), RVT-GII, Intron_maturas2 (pfam01348)