myRT

myRT report for GCA_900099115.2_assembly-MBHS

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Seq: FMSV02000367.1 (34806 bp)
Overview 1 RT 1: 20969-27928 bp Neighborhood of RT #1 [20969, 28110] KOG3544 DUF1566 RVT-DGRs sigpep_I_bact PDDEXK_2 Feature: gene Location: 20969-24043 bp Feature: domain Description: KOG3544 Location: 21692-22292 bp Feature: domain Description: KOG3544 Location: 21 692-22292 bp Feature: domain Description: DUF1566 Location: 23786-24041 bp Feature: domain Description: DUF1 566 Location: 23786-24041 bp Feature: gene Location: 24195-24515 bp Feature: gene Location: 24894-26138 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25059-25764 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 25059-25764 bp Feature: gene Location: 26137-26688 bp Feature: domain Description: sigpep_I_bact Location: 26260-26665 bp Feature: domain Description: sigpep_I_bact Location: 26260-26665 bp Feature: gene Location: 27208-28110 bp Feature: domain Description: PDDEXK_2 Location: 27238-27928 bp Feature: domain Description: PDDEXK_2 Location: 27238-27928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), DUF1566 (pfam07603), RVT-DGRs, sigpep_I_bact (TIGR02227), PDDEXK_2 (pfam12784)

Seq: FMSV02000558.1 (193748 bp)
Overview 1 RT 1: 33228-35736 bp Neighborhood of RT #1 [33228, 35750] Avd_like RVT-DGRs YfmG Feature: gene Location: 33228-33644 bp Feature: gene Location: 33634-33993 bp Feature: domain Description: Avd_like Location: 33658-33964 bp Feature: domain Description: Avd_like Location: 33658-33964 bp Feature: gene Location: 34001-35068 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34211-34859 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 342 11-34859 bp Feature: gene Location: 35081-35404 bp Feature: gene Location: 35517-35750 bp Feature: domain Description: YfmG Location: 35520-35736 bp Feature: domain Description: YfmG Location: 3552 0-35736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YfmG (COG1262)

Seq: FMSV02000544.1 (36022 bp)
Overview 1 RT 1: 13156-17087 bp Neighborhood of RT #1 [13156, 17087] RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 13156-13395 bp Feature: gene Location: 13417-13872 bp Feature: gene Location: 13890-16403 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14520-15120 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14520-15120 bp Feature: domain Description: Cas_Cas1 Location: 15408-16251 bp Feature: domain Description: Cas_Cas1 Location: 15408-16251 bp Feature: gene Location: 16400-16678 bp Feature: domain Description: Cas2_I_II_III Location: 16412-16640 bp Feature: domain Description: Cas2_I_II_III Location: 16412-16640 bp Feature: gene Location: 16890-17087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442)

Seq: FMSV02000542.1 (212560 bp)
Overview 1 RT 1: 71797-75997 bp Neighborhood of RT #1 [71797, 76011] RVT-GII GIIM PseudoU_synth_EcTruD CcmA Feature: gene Location: 71797-72060 bp Feature: gene Location: 72333-72560 bp Feature: gene Location: 72610-73758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72727-73393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72727-73393 bp Feature: domain Description: GIIM Note: maturase Location: 73495-73693 bp Feature: domain Description: GIIM Note: maturase Location: 734 95-73693 bp Feature: gene Location: 74002-75075 bp Feature: domain Description: PseudoU_synth_EcTruD Location: 74077-75040 bp Feature: domain Description: PseudoU_synth_EcTruD Location: 74 077-7504 0 bp Feature: gene Location: 75097-76011 bp Feature: domain Description: CcmA Location: 75100-75997 bp Feature: domain Description: CcmA Location: 75100-75997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PseudoU_synth_EcTruD (cd02575), CcmA (COG4133)

Seq: FMSV02000540.1 (103328 bp)
Overview 1 RT 1: 99007-103312 bp Neighborhood of RT #1 [99007, 103326] LolA_like RVT-GII GIIM DDE_Tnp_1_4 Feature: gene Location: 99007-99975 bp Feature: domain Description: LolA_like Location: 99136-99895 bp Feature: domain Description: LolA_like Location: 99136-99895 bp Feature: gene Location: 100420-100611 bp Feature: gene Location: 100702-101991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100960-101626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100960-101626 bp Feature: domain Description: GIIM Note: maturase Location: 101734-101926 bp Feature: domain Description: GIIM Note: maturase Location: 101734-101926 bp Feature: gene Location: 102158-102712 bp Feature: gene Location: 103021-103326 bp Feature: domain Description: DDE_Tnp_1_4 Location: 103057-103312 bp Feature: domain Description: DDE_Tnp_1_4 Location: 10305 7-103312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolA_like (pfam17131), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701)

Seq: FMSV02000543.1 (125737 bp)
Overview 1 RT 1: 73423-77362 bp Neighborhood of RT #1 [73423, 77362] RVT-GII Feature: gene Location: 73423-73758 bp Feature: gene Location: 73885-74076 bp Feature: gene Location: 74167-75246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74425-75091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74425-75091 bp Feature: gene Location: 75562-75747 bp Feature: gene Location: 77117-77362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FMSV02000084.1 (1581 bp)
Overview 1 RT 1: 646-1564 bp Neighborhood of RT #1 [646, 1578] RVT-GII Feature: gene Location: 646-822 bp Feature: gene Location: 1168-1578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1390-1564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1390-1564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FMSV02000189.1 (3252 bp)
Overview 1 RT 1: 136-2260 bp Neighborhood of RT #1 [136, 2484] RVT-Retrons Peptidase_C14 Feature: gene Location: 136-777 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142-607 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142-607 bp Feature: gene Location: 996-1169 bp Feature: gene Location: 1492-2484 bp Feature: domain Description: Peptidase_C14 Location: 1585-2260 bp Feature: domain Description: Peptidase_C14 Location: 158 5-2260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Peptidase_C14 (pfam00656)

Seq: FMSV02000090.1 (1052 bp)
Overview 1 RT 1: 1-1050 bp Neighborhood of RT #1 [1, 1050] RVT-GII Feature: gene Location: 1-783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259 -778 bp Feature: gene Location: 874-1050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FMSV02000399.1 (24628 bp)
Overview 1 RT 1: 2-2458 bp Neighborhood of RT #1 [2, 2458] RVT-GII GIIM Feature: gene Location: 2-136 bp Feature: gene Location: 145-381 bp Feature: gene Location: 446-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1229 bp Feature: domain Description: GIIM Note: maturase Location: 1331-1529 bp Feature: domain Description: GIIM Note: maturase Location: 1331-1529 bp Feature: gene Location: 1683-2057 bp Feature: gene Location: 2186-2458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FMSV02000009.1 (3683 bp)
Overview 1 RT 1: 2909-3617 bp Neighborhood of RT #1 [2909, 3682] RVT-GII GIIM Feature: gene Location: 2909-3682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2921-3356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2921-3356 bp Feature: domain Description: GIIM Note: maturase Location: 3398-3617 bp Feature: domain Description: GIIM Note: maturase Location: 3398-3617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FMSV02000174.1 (5560 bp)
Overview 1 RT 1: 2352-5505 bp Neighborhood of RT #1 [2352, 5558] RVT-GII GIIM cysS cysS Feature: gene Location: 2352-2495 bp Feature: gene Location: 2592-2729 bp Feature: gene Location: 3129-4442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3330-3945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3330-3945 bp Feature: domain Description: GIIM Note: maturase Location: 4020-4227 bp Feature: domain Description: GIIM Note: maturase Location: 4020-4227 bp Feature: gene Location: 4663-4971 bp Feature: domain Description: cysS Location: 4669-4966 bp Feature: domain Description: cysS Location: 4669-4966 bp Feature: gene Location: 4995-5558 bp Feature: domain Description: cysS Location: 4998-5505 bp Feature: domain Description: cysS Location: 4998-5505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), cysS (TIGR00435)

Seq: FMSV02000101.1 (4054 bp)
Overview 1 RT 1: 56-3632 bp Neighborhood of RT #1 [56, 3632] RVT-GII GIIM Feature: gene Location: 56-625 bp Feature: gene Location: 1308-2732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701-2367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701-2367 bp Feature: domain Description: GIIM Note: maturase Location: 2469-2667 bp Feature: domain Description: GIIM Note: maturase Location: 2469-2667 bp Feature: gene Location: 3042-3632 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FMSV02000502.1 (70728 bp)
Overview 1 RT 1: 18208-23236 bp Neighborhood of RT #1 [18208, 23256] DUF820 RVT-DGRs Avd_like TPR YfmG Feature: gene Location: 18208-18372 bp Feature: domain Description: DUF820 Location: 18229-18358 bp Feature: domain Description: DUF820 Location: 18229-18358 bp Feature: gene Location: 18469-18624 bp Feature: gene Location: 18696-19724 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18879-19518 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18879-19518 bp Feature: gene Location: 19748-20104 bp Feature: domain Description: Avd_like Location: 19775-20090 bp Feature: domain Description: Avd_like Location: 19775-20090 bp Feature: gene Location: 20236-23256 bp Feature: domain Description: TPR Location: 22021-22336 bp Feature: domain Description: TPR Location: 22021-22336 bp Feature: domain Description: YfmG Location: 22420-23236 bp Feature: domain Description: YfmG Location: 22420-23236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, RVT-DGRs, Avd_like (cd16376), TPR (smart00028), YfmG (COG1262)

Seq: FMSV02000556.1 (289878 bp)
Overview 1 RT 1: 6334-11969 bp 2 RT 2: 113969-120353 bp Neighborhood of RT #1 [6334, 12154] COG4995 Haemagg_act RVT-UG18 PKc YjhB Neighborhood of RT #2 [113969, 120358] CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III YoeB_toxin Feature: gene Location: 6334-7542 bp Feature: domain Description: COG4995 Location: 6709-7531 bp Feature: domain Description: COG4995 Location: 6709-7531 bp Feature: gene Location: 7533-8306 bp Feature: domain Description: Haemagg_act Location: 7650-7953 bp Feature: domain Description: Haemagg_act Location: 7650-7953 bp Feature: gene Location: 8752-9543 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 9208-9481 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 9208-9481 bp Feature: gene Location: 9723-11411 bp Feature: domain Description: PKc Location: 9882-10482 bp Feature: domain Description: PKc Location: 9882-10482 bp Feature: gene Location: 11408-12154 bp Feature: domain Description: YjhB Location: 11450-11969 bp Feature: domain Description: YjhB Location: 11450-11969 bp Feature: gene Location: 113969-114103 bp Feature: gene Location: 114589-114744 bp Feature: gene Location: 115295-118258 bp Feature: domain Description: CRISPR_Cas6 Location: 115769-116147 bp Feature: domain Description: CRISPR_Cas6 Location: 115 769-116147 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 116441-117038 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 116441-117038 bp Feature: domain Description: Cas1_I-II-III Location: 117263-118223 bp Feature: domain Description: Cas1_I-II-III Location: 117263-118223 bp Feature: gene Location: 119330-119569 bp Feature: gene Location: 120101-120358 bp Feature: domain Description: YoeB_toxin Location: 120116-120353 bp Feature: domain Description: YoeB_toxin Location: 120116-120353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4995 (Uncharacterized conserved protein, contains CHAT domain ), Haemagg_act (smart00912), RVT-UG18, PKc (cd00180), YjhB (COG1051), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), YoeB_toxin (pfam06769)

Seq: FMSV02000549.1 (122888 bp)
Overview 1 RT 1: 2783-10827 bp Neighborhood of RT #1 [2783, 10827] ligand_gated_channel GAF_2 PRK11107 PRK11107 PRK11107 RVT-GII GIIM Feature: gene Location: 2783-4939 bp Feature: domain Description: ligand_gated_channel Location: 3005-4937 bp Feature: domain Description: ligand_gated_channel Location: 3005-4937 bp Feature: gene Location: 5065-7776 bp Feature: domain Description: GAF_2 Location: 5104-5407 bp Feature: domain Description: GAF_2 Location: 5104-5407 bp Feature: domain Description: PRK11107 Location: 5584-6532 bp Feature: domain Description: PRK11107 Location: 5584-6532 bp Feature: domain Description: PRK11107 Location: 6613-6934 bp Feature: domain Description: PRK11107 Location: 6613-6934 bp Feature: domain Description: PRK11107 Location: 6982-7768 bp Feature: domain Description: PRK11107 Location: 6982-7768 bp Feature: gene Location: 7922-9211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8180-8846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8180-8846 bp Feature: domain Description: GIIM Note: maturase Location: 8948-9146 bp Feature: domain Description: GIIM Note: maturase Location: 8948-9146 bp Feature: gene Location: 9620-9943 bp Feature: gene Location: 10132-10827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ligand_gated_channel (cd01347), GAF_2 (pfam13185), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), RVT-GII, GIIM (pfam08388)