myRT

myRT report for GCA_900100345.1_IMG-taxon_2617270934_annotated_assembly

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Seq: FMTT01000063.1 (26536 bp)
Overview 1 RT 1: 2-2257 bp Neighborhood of RT #1 [2, 2310] RVT-GII MhpC Feature: gene Location: 2-145 bp Feature: gene Location: 616-855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691-784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 691 -784 bp Feature: gene Location: 1053-1232 bp Feature: gene Location: 1438-2310 bp Feature: domain Description: MhpC Location: 1480-2257 bp Feature: domain Description: MhpC Location: 1 480-2257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, MhpC (COG0596)

Seq: FMTT01000029.1 (66669 bp)
Overview 1 RT 1: 2-2044 bp Neighborhood of RT #1 [2, 2127] RVT-GII HNHc DDE_3 Feature: gene Location: 2-1354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-506 bp Feature: domain Description: HNHc Note: nucleases Location: 1106-1271 bp Feature: domain Description: HNHc Note: nucleases Location: 1106-12 71 bp Feature: gene Location: 1547-1696 bp Feature: gene Location: 1783-2127 bp Feature: domain Description: DDE_3 Location: 1792-2044 bp Feature: domain Description: DDE_3 Location: 1792 -2 044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), DDE_3 (pfam13358)

Seq: FMTT01000112.1 (1042 bp)
Overview 1 RT 1: 3-1041 bp Neighborhood of RT #1 [3, 1041] RVT-UG13 Feature: gene Location: 3-794 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 306-774 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 3 06-774 bp Feature: gene Location: 874-1041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG13

Seq: FMTT01000031.1 (65884 bp)
Overview 1 RT 1: 733-7626 bp Neighborhood of RT #1 [733, 7640] ligA RVT-GII Intron_maturas2 HNHc ligA pcrA Feature: gene Location: 733-1572 bp Feature: domain Description: ligA Location: 748-1561 bp Feature: domain Description: ligA Location: 74 8-1561 bp Feature: gene Location: 1695-3491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959-2787 bp Feature: domain Description: Intron_maturas2 Location: 2883-3180 bp Feature: domain Description: Intron_maturas2 Location: 2883-3180 bp Feature: domain Description: HNHc Note: nucleases Location: 3291-3462 bp Feature: domain Description: HNHc Note: nucleases Location: 3291-34 62 bp Feature: gene Location: 4107-5279 bp Feature: domain Description: ligA Location: 4119-5268 bp Feature: domain Description: ligA Location: 4 119-5268 bp Feature: gene Location: 5328-7640 bp Feature: domain Description: pcrA Location: 5364-7626 bp Feature: domain Description: pcrA Location: 5364 -7626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ligA (PRK14351), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), pcrA (TIGR01073)

Seq: FMTT01000073.1 (18117 bp)
Overview 1 RT 1: 11875-15665 bp Neighborhood of RT #1 [11875, 15676] HTH_21 YkfC RVT-GII GIIM PHA02517 YecE Feature: gene Location: 11875-12261 bp Feature: domain Description: HTH_21 Location: 11992-12139 bp Feature: domain Description: HTH_21 Location: 11992-12139 bp Feature: gene Location: 12897-13121 bp Feature: domain Description: YkfC Location: 12906-13104 bp Feature: domain Description: YkfC Location: 12906-13104 bp Feature: gene Location: 13341-14435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13377-13914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13377-13914 bp Feature: domain Description: GIIM Note: maturase Location: 13986-14199 bp Feature: domain Description: GIIM Note: maturase Location: 13986-14199 bp Feature: gene Location: 14531-14974 bp Feature: domain Description: PHA02517 Location: 14543-14963 bp Feature: domain Description: PHA025 17 Location: 145 43-14963 bp Feature: gene Location: 15323-15676 bp Feature: domain Description: YecE Location: 15326-15665 bp Feature: domain Description: YecE Location: 15 326-15 665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), YkfC (COG3344), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), YecE (COG1801)