myRT

myRT report for GCA_900100685.1_IMG-taxon_2654588145_annotated_assembly

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Seq: FOIO01000050.1 (39959 bp)
Overview 1 RT 1: 37908-39881 bp Neighborhood of RT #1 [37908, 39958] RVT-GII RVT-GII INT_RitC_C_like Feature: gene Location: 37908-38120 bp Feature: gene Location: 38269-39078 bp Feature: gene Location: 39029-39361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39254-39359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39254-39359 bp Feature: gene Location: 39455-39664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39461-39542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39461 -39542 bp Feature: gene Location: 39770-39958 bp Feature: domain Description: INT_RitC_C_like Location: 39773-39881 bp Feature: domain Description: INT_RitC_C_like Location: 39773-39881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitC_C_like (cd01182)

Seq: FOIO01000087.1 (16518 bp)
Overview 1 RT 1: 2-1690 bp Neighborhood of RT #1 [2, 1690] recomb_XerD RVT-GII Feature: gene Location: 2-718 bp Feature: domain Description: recomb_XerD Location: 374-710 bp Feature: domain Description: recomb_XerD Location: 374-710 bp Feature: gene Location: 889-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892-1039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892 -1039 bp Feature: gene Location: 1116-1376 bp Feature: gene Location: 1529-1690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recomb_XerD (TIGR02225), RVT-GII

Seq: FOIO01000069.1 (24871 bp)
Overview 1 RT 1: 1396-5404 bp Neighborhood of RT #1 [1396, 5439] DUF4368 RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 1396-1572 bp Feature: domain Description: DUF4368 Location: 1405-1570 bp Feature: domain Description: DUF43 68 Location: 1405-1570 bp Feature: gene Location: 1600-2349 bp Feature: gene Location: 2730-4532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3000-3813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 000-3 813 bp Feature: domain Description: Intron_maturas2 Location: 3969-4188 bp Feature: domain Description: Intron_maturas2 Location: 3 969-4188 bp Feature: domain Description: HNHc Note: nucleases Location: 4362-4512 bp Feature: domain Description: HNHc Note: nucleases Location: 43 62-4512 bp Feature: gene Location: 4653-4922 bp Feature: gene Location: 5077-5439 bp Feature: domain Description: Relaxase Location: 5113-5404 bp Feature: domain Description: Relaxase Location: 5113 -5404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4368 (pfam14287), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432)

Seq: FOIO01000102.1 (11081 bp)
Overview 1 RT 1: 8581-11072 bp Neighborhood of RT #1 [8581, 11080] HTH_21 PHA02517 RVT-GII GIIM recomb_XerD Feature: gene Location: 8581-8973 bp Feature: domain Description: HTH_21 Location: 8707-8866 bp Feature: domain Description: HTH_21 Location: 8707-8866 bp Feature: gene Location: 9031-9366 bp Feature: domain Description: PHA02517 Location: 9046-9364 bp Feature: domain Description: PHA02517 Location: 904 6-9364 bp Feature: gene Location: 9534-10193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9537-9744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9537-974 4 bp Feature: domain Description: GIIM Note: maturase Location: 9798-10017 bp Feature: domain Description: GIIM Note: maturase Location: 9798-10017 bp Feature: gene Location: 10364-11080 bp Feature: domain Description: recomb_XerD Location: 10736-11072 bp Feature: domain Description: recomb_XerD Location: 10736-11072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), recomb_XerD (TIGR02225)

Seq: FOIO01000053.1 (37460 bp)
Overview 1 RT 1: 35847-37295 bp Neighborhood of RT #1 [35847, 37459] DUF3837 RVT-GII GIIM Feature: gene Location: 35847-36155 bp Feature: domain Description: DUF3837 Location: 35853-36150 bp Feature: domain Description: DUF3837 Location: 35 85 3-3615 0 bp Feature: gene Location: 36357-36602 bp Feature: gene Location: 36836-37459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36842-37004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36842-37004 bp Feature: domain Description: GIIM Note: maturase Location: 37064-37295 bp Feature: domain Description: GIIM Note: maturase Location: 37064-37295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3837 (pfam12939), RVT-GII, GIIM (pfam08388)

Seq: FOIO01000098.1 (13374 bp)
Overview 1 RT 1: 6832-10931 bp Neighborhood of RT #1 [6832, 10972] RVT-UG2 DDE_3 HTH_32 Feature: gene Location: 6832-7182 bp Feature: gene Location: 7245-8510 bp Feature: gene Location: 8886-9839 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9153-9819 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 9153-9819 bp Feature: gene Location: 9843-10469 bp Feature: domain Description: DDE_3 Location: 9906-10347 bp Feature: domain Description: DDE_3 Location: 9906 -10347 bp Feature: gene Location: 10505-10972 bp Feature: domain Description: HTH_32 Location: 10706-10931 bp Feature: domain Description: HTH_32 Location: 10706 -10931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, DDE_3 (pfam13358), HTH_32 (pfam13565)

Seq: FOIO01000096.1 (13870 bp)
Overview 1 RT 1: 2070-4321 bp Neighborhood of RT #1 [2070, 4321] YhcG_C YhcG RVT-GII Feature: gene Location: 2070-2453 bp Feature: domain Description: YhcG_C Location: 2073-2394 bp Feature: domain Description: YhcG_C Location: 207 3-2394 bp Feature: gene Location: 2426-2854 bp Feature: domain Description: YhcG Location: 2486-2822 bp Feature: domain Description: YhcG Location: 2486-2822 bp Feature: gene Location: 3559-3804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3565-3802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3565-3802 bp Feature: gene Location: 3825-4025 bp Feature: gene Location: 4130-4321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG_C, YhcG (COG4804), RVT-GII