myRT

myRT report for GCA_900101795.1_IMG-taxon_2693429822_annotated_assembly

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Seq: FNKX01000001.1 (3849379 bp)
Overview 1 RT 1: 122957-127791 bp 2 RT 2: 990430-996142 bp Neighborhood of RT #1 [122957, 127791] AraC_binding AraC group_II_RT_mat Acetyltransf_1 RVT-GII GIIM DDE_Tnp_1 Neighborhood of RT #2 [990430, 996153] PilA R_switched_YjbE RVT-GII GIIM PRK05678 sucC Feature: gene Location: 122957-123979 bp Feature: domain Description: AraC_binding Location: 123185-123515 bp Feature: domain Description: AraC_binding Location: 1 231 85-1 2351 5 bp Feature: domain Description: AraC Location: 123569-123884 bp Feature: domain Description: AraC Location: 1 23569-1 23884 bp Feature: gene Location: 124027-124881 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 124153-124303 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 241 53-1 24303 bp Feature: domain Description: Acetyltransf_1 Location: 124573-124819 bp Feature: domain Description: Acetyltransf_1 Location: 1 24573-1 2481 9 bp Feature: gene Location: 125032-125775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125044-125362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25044-1 25362 bp Feature: domain Description: GIIM Note: maturase Location: 125467-125677 bp Feature: domain Description: GIIM Note: maturase Location: 1 25467-1 25677 bp Feature: gene Location: 126083-127279 bp Feature: domain Description: DDE_Tnp_1 Location: 126302-126986 bp Feature: domain Description: DDE_Tnp_1 Location: 1 26302-1 26986 bp Feature: gene Location: 127441-127791 bp Feature: gene Location: 990430-991053 bp Feature: domain Description: PilA Location: 990550-990853 bp Feature: domain Description: PilA Location: 990550-990853 bp Feature: gene Location: 991211-991927 bp Feature: domain Description: R_switched_YjbE Location: 991262-991796 bp Feature: domain Description: R_switched_YjbE Location: 991 262-991 796 bp Feature: gene Location: 992048-993433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992384-993002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992384-993002 bp Feature: domain Description: GIIM Note: maturase Location: 993050-993278 bp Feature: domain Description: GIIM Note: maturase Location: 993050-993278 bp Feature: gene Location: 993972-994853 bp Feature: domain Description: PRK05678 Location: 993975-994851 bp Feature: domain Description: PRK05678 Location: 993975-994851 bp Feature: gene Location: 994984-996153 bp Feature: domain Description: sucC Location: 994987-996142 bp Feature: domain Description: sucC Location: 994987-9961 42 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_binding (pfam02311), AraC (COG2207), group_II_RT_mat (TIGR04416), Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), PilA (COG4969), R_switched_YjbE (TIGR03717), PRK05678 (succinyl-CoA synthetase subunit alpha; Validated)
sucC (PRK00696)

Seq: FNKX01000002.1 (2956712 bp)
Overview 1 RT 1: 1486054-1491049 bp 2 RT 2: 1985672-1994333 bp Neighborhood of RT #1 [1486054, 1491129] COG3795 RVT-GII GIIM DUF1488 RimI Neighborhood of RT #2 [1985672, 1994563] RVT-GII PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII GIIM Phage_int_SAM_4 INT_IntI_C Zn_Tnp_IS91 Y2_Tnp Feature: gene Location: 1486054-1486614 bp Feature: domain Description: COG3795 Location: 1486264-1486594 bp Feature: domain Description: COG3795 Location: 14862 64-1486594 bp Feature: gene Location: 1486817-1487347 bp Feature: gene Location: 1487565-1488962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1487901-1488519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1487901-1488519 bp Feature: domain Description: GIIM Note: maturase Location: 1488567-1488795 bp Feature: domain Description: GIIM Note: maturase Location: 1488567-1488795 bp Feature: gene Location: 1490061-1490333 bp Feature: domain Description: DUF1488 Location: 1490085-1490298 bp Feature: domain Description: DUF1488 Location: 1490085-14902 98 bp Feature: gene Location: 1490449-1491129 bp Feature: domain Description: RimI Location: 1490839-1491049 bp Feature: domain Description: RimI Location: 1490839-1491049 bp Feature: gene Location: 1985672-1985917 bp Feature: gene Location: 1986793-1987053 bp Feature: gene Location: 1987429-1987917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1987678-1987909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1987678-1987909 bp Feature: gene Location: 1987932-1990151 bp Feature: domain Description: PinE Location: 1987980-1988568 bp Feature: domain Description: PinE Location: 1987980-1988568 bp Feature: domain Description: Zn_ribbon_recom Location: 1988934-1989099 bp Feature: domain Description: Zn_ribbon_recom Location: 1988934-1989099 bp Feature: domain Description: HTH_17 Location: 1989813-1989933 bp Feature: domain Description: HTH_17 Location: 1989813-1989933 bp Feature: domain Description: HTH_17 Location: 1990002-1990107 bp Feature: domain Description: HTH_17 Location: 1990002 -1990107 bp Feature: gene Location: 1990144-1990308 bp Feature: gene Location: 1990492-1990701 bp Feature: gene Location: 1990693-1991424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990696-1991068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990696-1991068 bp Feature: domain Description: GIIM Note: maturase Location: 1991137-1991347 bp Feature: domain Description: GIIM Note: maturase Location: 1991137-1991347 bp Feature: gene Location: 1992456-1993334 bp Feature: domain Description: Phage_int_SAM_4 Location: 1992468-1992714 bp Feature: domain Description: Phage_int_SAM_4 Location: 1992 468-1992 714 bp Feature: domain Description: INT_IntI_C Location: 1992750-1993239 bp Feature: domain Description: INT_IntI_C Location: 1992 750-19932 39 bp Feature: gene Location: 1993343-1994563 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1993373-1993649 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1993373-1993649 bp Feature: domain Description: Y2_Tnp Location: 1993775-1994333 bp Feature: domain Description: Y2 _Tnp Location: 1993775-1994333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3795 (Uncharacterized conserved protein ), RVT-GII, GIIM (pfam08388), DUF1488 (pfam07369), RimI (COG0456), PinE (COG1961), Zn_ribbon_recom (pfam13408), HTH_17 (pfam12728), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193)
Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: FNKX01000003.1 (936669 bp)
Overview 1 RT 1: 483024-486875 bp 2 RT 2: 574645-579715 bp Neighborhood of RT #1 [483024, 486955] Rve group_II_RT_mat RVT-GII GIIM Rve DDE_Tnp_ISL3 Neighborhood of RT #2 [574645, 579717] nifA RVT-GII FixJ PRK00756 Feature: gene Location: 483024-483425 bp Feature: domain Description: Rve Location: 483090-483324 bp Feature: domain Description: Rve Location: 483 090-483 3 24 bp Feature: gene Location: 483812-484018 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 483866-483998 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 483 866-483 998 bp Feature: gene Location: 484087-485073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484090-484687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484090-484687 bp Feature: domain Description: GIIM Note: maturase Location: 484768-484990 bp Feature: domain Description: GIIM Note: maturase Location: 484768-484990 bp Feature: gene Location: 485126-485653 bp Feature: domain Description: Rve Location: 485156-485585 bp Feature: domain Description: Rve Location: 485156-485585 bp Feature: gene Location: 486302-486955 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 486557-486875 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 486557-486875 bp Feature: gene Location: 574645-576483 bp Feature: domain Description: nifA Location: 574804-576481 bp Feature: domain Description: nifA Location: 574804-576481 bp Feature: gene Location: 576759-576899 bp Feature: gene Location: 577566-577892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577584-577701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 577584-577701 bp Feature: gene Location: 578297-579088 bp Feature: domain Description: FixJ Location: 578897-579014 bp Feature: domain Description: FixJ Location: 578897-579014 bp Feature: gene Location: 579085-579717 bp Feature: domain Description: PRK00756 Location: 579130-579715 bp Feature: domain Description: PRK00756 Location: 57913 0-579715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), DDE_Tnp_ISL3 (pfam01610), nifA (TIGR01817), FixJ (COG4566), PRK00756 (acyltransferase NodA; Provisional)

Seq: FNKX01000004.1 (844192 bp)
Overview 1 RT 1: 160228-164258 bp 2 RT 2: 432892-444962 bp 3 RT 3: 635610-638537 bp Neighborhood of RT #1 [160228, 164272] RVT-GII GIIM PRK10636 Neighborhood of RT #2 [432892, 445087] RVT-GII GIIM Transposase_mut TIGR03549 ParE RVT-GII TadA Neighborhood of RT #3 [635610, 638566] RVT-GII GIIM PRK12511 Feature: gene Location: 160228-160617 bp Feature: gene Location: 160629-160802 bp Feature: gene Location: 161037-162305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161286-161949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161286-16194 9 bp Feature: domain Description: GIIM Note: maturase Location: 162018-162234 bp Feature: domain Description: GIIM Note: maturase Location: 162018-162234 bp Feature: gene Location: 162408-162563 bp Feature: gene Location: 162593-164272 bp Feature: domain Description: PRK10636 Location: 162596-164258 bp Feature: domain Description: PRK10636 Location: 162596-164 258 bp Feature: gene Location: 432892-433068 bp Feature: gene Location: 433072-433245 bp Feature: gene Location: 433480-434748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433729-434392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 33729-4 34 392 bp Feature: domain Description: GIIM Note: maturase Location: 434461-434677 bp Feature: domain Description: GIIM Note: maturase Location: 4 34 4 61-4 34 677 bp Feature: gene Location: 435418-436728 bp Feature: domain Description: Transposase_mut Location: 435556-436633 bp Feature: domain Description: Transposase_mut Location: 4 35556-4 36633 bp Feature: gene Location: 437142-439346 bp Feature: domain Description: TIGR03549 Location: 437148-439311 bp Feature: domain Description: TIGR0354 9 Location: 4 3714 8-4 39311 bp Feature: gene Location: 440986-441306 bp Feature: domain Description: ParE Location: 440995-441274 bp Feature: domain Description: ParE Location: 4 4 0995-4 4 1274 bp Feature: gene Location: 441451-442323 bp Feature: gene Location: 442339-443307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 442945-443266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 294 5-4 4 3266 bp Feature: gene Location: 443672-443962 bp Feature: gene Location: 444176-445087 bp Feature: domain Description: TadA Location: 444629-444962 bp Feature: domain Description: TadA Location: 4 4 4 629-4 4 4 962 bp Feature: gene Location: 635610-635918 bp Feature: gene Location: 635948-636133 bp Feature: gene Location: 636442-637710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 636691-637354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 636691-637354 bp Feature: domain Description: GIIM Note: maturase Location: 637423-637639 bp Feature: domain Description: GIIM Note: maturase Location: 6374 23-637639 bp Feature: gene Location: 637945-638118 bp Feature: gene Location: 638360-638566 bp Feature: domain Description: PRK12511 Location: 638372-638537 bp Feature: domain Description: PRK12511 Location: 638372-638537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK10636 (putative ABC transporter ATP-binding protein; Provisional), Transposase_mut (pfam00872), TIGR03549 (YcaO domain protein), ParE (COG3668), TadA (COG0590), PRK12511 (RNA polymerase sigma factor; Provisional)

Seq: FNKX01000005.1 (390356 bp)
Overview 1 RT 1: 57995-63476 bp 2 RT 2: 351347-355578 bp Neighborhood of RT #1 [57995, 63523] DDE_Tnp_1 RVT_N RVT-GII GIIM COG3547 Neighborhood of RT #2 [351347, 355578] xerC KfrA_N RVT-GII GIIM T3SC_IA_ShcM-like Feature: gene Location: 57995-58171 bp Feature: gene Location: 58562-59938 bp Feature: domain Description: DDE_Tnp_1 Location: 58961-59645 bp Feature: domain Description: DDE_Tnp_1 Location: 5 8961-5 9645 bp Feature: gene Location: 60150-61808 bp Feature: domain Description: RVT_N Location: 60195-60438 bp Feature: domain Description: RVT_N Location: 60195 -60438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60483-61119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60483-61119 bp Feature: domain Description: GIIM Note: maturase Location: 61170-61404 bp Feature: domain Description: GIIM Note: maturase Location: 61170-61404 bp Feature: gene Location: 62386-62514 bp Feature: gene Location: 62597-63523 bp Feature: domain Description: COG3547 Location: 62609-63476 bp Feature: domain Description: COG35 47 Location: 62609-63476 bp Feature: gene Location: 351347-352546 bp Feature: domain Description: xerC Location: 351530-352529 bp Feature: domain Description: xerC Location: 35 15 30-35 25 29 bp Feature: gene Location: 352690-353724 bp Feature: domain Description: KfrA_N Location: 352795-353128 bp Feature: domain Description: KfrA_N Location: 35 2795 -35 3128 bp Feature: gene Location: 353785-354663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353788-354154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 3788-35 415 4 bp Feature: domain Description: GIIM Note: maturase Location: 354208-354439 bp Feature: domain Description: GIIM Note: maturase Location: 35 4208-35 4439 bp Feature: gene Location: 354930-355394 bp Feature: domain Description: T3SC_IA_ShcM-like Location: 355002-355356 bp Feature: domain Description: T3SC_IA_ShcM-like Location: 35 5 002-35 5 35 6 bp Feature: gene Location: 355408-355578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), xerC (PRK01287), KfrA_N (pfam11740), T3SC_IA_ShcM-like (cd17020)