myRT

myRT report for GCA_900101875.1_IMG-taxon_2671180113_annotated_assembly

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Seq: FNAI01000015.1 (158201 bp)
Overview 1 RT 1: 149173-153294 bp Neighborhood of RT #1 [149173, 153294] LGT_LGT_LGT_TIGR03299 RVT_N RVT-GII GIIM HNHc DUF932 Feature: gene Location: 149173-149742 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 149221-149722 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 1 49221 -1 49722 bp Feature: gene Location: 149945-150238 bp Feature: gene Location: 150249-152060 bp Feature: domain Description: RVT_N Location: 150285-150528 bp Feature: domain Description: RVT_N Location: 1 50285-1 50528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150579-151293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50579-1 51 293 bp Feature: domain Description: GIIM Note: maturase Location: 151374-151623 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 374-1 51 623 bp Feature: domain Description: HNHc Note: nucleases Location: 151830-151965 bp Feature: domain Description: HNHc Note: nucleases Location: 1 51 830-1 51 965 bp Feature: gene Location: 152154-152573 bp Feature: domain Description: DUF932 Location: 152157-152472 bp Feature: domain Description: DUF932 Location: 1 521 57-1 52472 bp Feature: gene Location: 152620-153294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LGT_LGT_LGT_TIGR03299, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF932 (pfam06067)

Seq: FNAI01000041.1 (2490 bp)
Overview 1 RT 1: 567-2355 bp Neighborhood of RT #1 [567, 2381] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 567-2381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-1653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831-1653 bp Feature: domain Description: Intron_maturas2 Location: 1845-2070 bp Feature: domain Description: Intron_maturas2 Location: 1845-2 070 bp Feature: domain Description: HNHc Note: nucleases Location: 2208-2355 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 08-2 355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: FNAI01000010.1 (274337 bp)
Overview 1 RT 1: 199464-204349 bp Neighborhood of RT #1 [199464, 204762] RVT-UG2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like COG4447 Feature: gene Location: 199464-199700 bp Feature: gene Location: 199890-200024 bp Feature: gene Location: 200343-201893 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 200586-201495 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 200586-201495 bp Feature: gene Location: 201994-203295 bp Feature: domain Description: Arm-DNA-bind_5 Location: 202030-202264 bp Feature: domain Description: Arm-DNA-bind_5 Location: 20203 0-202264 bp Feature: domain Description: Phage_int_SAM_5 Location: 202393-202678 bp Feature: domain Description: Phage_int_SAM_5 Location: 2023 93 -202678 bp Feature: domain Description: INTN1_C_like Location: 202738-203209 bp Feature: domain Description: INTN1_C_like Location: 20273 8-203 209 bp Feature: gene Location: 203749-204762 bp Feature: domain Description: COG4447 Location: 203842-204349 bp Feature: domain Description: COG4447 Location: 203 842-2043 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor )

Seq: FNAI01000032.1 (20773 bp)
Overview 1 RT 1: 9525-13995 bp Neighborhood of RT #1 [9525, 14024] TniQ TniB RVT_N RVT-GII GIIM HNHc TniB Feature: gene Location: 9525-10781 bp Feature: domain Description: TniQ Location: 9573-10005 bp Feature: domain Description: TniQ Location: 9573-10005 bp Feature: gene Location: 10778-11152 bp Feature: domain Description: TniB Location: 10781-10886 bp Feature: domain Description: TniB Location: 10781-10886 bp Feature: gene Location: 11293-13008 bp Feature: domain Description: RVT_N Location: 11341-11581 bp Feature: domain Description: RVT_N Location: 1134 1-11581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11635-12274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11635-12274 bp Feature: domain Description: GIIM Note: maturase Location: 12349-12580 bp Feature: domain Description: GIIM Note: maturase Location: 1234 9-12580 bp Feature: domain Description: HNHc Note: nucleases Location: 12739-12943 bp Feature: domain Description: HNHc Note: nucleases Location: 12739-1294 3 bp Feature: gene Location: 13313-13483 bp Feature: gene Location: 13548-14024 bp Feature: domain Description: TniB Location: 13596-13995 bp Feature: domain Description: TniB Location: 13596-13995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TniQ (pfam06527), TniB (pfam05621), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)