myRT

myRT report for GCA_900102365.1_IMG-taxon_2634166354_annotated_assembly

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Seq: FOIN01000010.1 (69600 bp)
Overview 1 RT 1: 34308-37885 bp Neighborhood of RT #1 [34308, 37965] YcaP DUF3792 RVT-GII GIIM nicotinamidase_related Feature: gene Location: 34308-34940 bp Feature: domain Description: YcaP Location: 34314-34935 bp Feature: domain Description: YcaP Location: 3431 4-34935 bp Feature: gene Location: 34990-35346 bp Feature: domain Description: DUF3792 Location: 35008-35317 bp Feature: domain Description: DUF3792 Location: 35008-3531 7 bp Feature: gene Location: 35489-36832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35735-36353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35735-36353 bp Feature: domain Description: GIIM Note: maturase Location: 36407-36617 bp Feature: domain Description: GIIM Note: maturase Location: 36407-3661 7 bp Feature: gene Location: 37168-37368 bp Feature: gene Location: 37438-37965 bp Feature: domain Description: nicotinamidase_related Location: 37444-37885 bp Feature: domain Description: nicotinamidase_related Location: 37444-37885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcaP (COG2323), DUF3792 (pfam12670), RVT-GII, GIIM (pfam08388), nicotinamidase_related (cd01014)

Seq: FOIN01000045.1 (20143 bp)
Overview 1 RT 1: 16411-20066 bp Neighborhood of RT #1 [16411, 20140] rplA PRK14539 RVT-GII GIIM HTH_Tnp_1 Feature: gene Location: 16411-17097 bp Feature: domain Description: rplA Location: 16417-17089 bp Feature: domain Description: rplA Location: 16417-17089 bp Feature: gene Location: 17165-17578 bp Feature: domain Description: PRK14539 Location: 17171-17573 bp Feature: domain Description: PRK14539 Location: 17171-17573 bp Feature: gene Location: 17954-19252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18155-18773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18155-18773 bp Feature: domain Description: GIIM Note: maturase Location: 18827-19043 bp Feature: domain Description: GIIM Note: maturase Location: 1882 7-19043 bp Feature: gene Location: 19422-19607 bp Feature: gene Location: 19883-20140 bp Feature: domain Description: HTH_Tnp_1 Location: 19931-20066 bp Feature: domain Description: HTH_Tnp_1 Location: 19931-2 0066 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplA (PRK05424), PRK14539 (50S ribosomal protein L11/unknown domain fusion protein; Provisional), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527)

Seq: FOIN01000004.1 (125735 bp)
Overview 1 RT 1: 107754-109695 bp 2 RT 2: 112237-121492 bp Neighborhood of RT #1 [107754, 109697] WYL RVT-GII Neighborhood of RT #2 [112237, 121518] Inhibitor_I9 Peptidases_S8_C5a_Peptidase fn3_5 FlgD_ig FIVAR FIVAR FIVAR FIDO RVT-GII YdcF-like Feature: gene Location: 107754-108821 bp Feature: domain Description: WYL Location: 108231-108801 bp Feature: domain Description: WYL Location: 10823 1-108801 bp Feature: gene Location: 109053-109184 bp Feature: gene Location: 109428-109697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109632-109695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10963 2-109695 bp Feature: gene Location: 112237-116799 bp Feature: domain Description: Inhibitor_I9 Location: 112516-112720 bp Feature: domain Description: Inhibitor_I9 Location: 112516-112720 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 112870-114550 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 112870-114550 bp Feature: domain Description: fn3_5 Location: 114622-115066 bp Feature: domain Description: fn3 _5 Location: 114622-115066 bp Feature: domain Description: FlgD_ig Location: 115555-115636 bp Feature: domain Description: FlgD_ig Location: 115555-11563 6 bp Feature: domain Description: FIVAR Location: 116026-116206 bp Feature: domain Description: FIVAR Location: 116026-116206 bp Feature: domain Description: FIVAR Location: 116236-116410 bp Feature: domain Description: FIVAR Location: 11623 6-116410 bp Feature: domain Description: FIVAR Location: 116440-116623 bp Feature: domain Description: FIVAR Location: 116440-116623 bp Feature: gene Location: 117792-118655 bp Feature: domain Description: FIDO Location: 118029-118581 bp Feature: domain Description: FIDO Location: 118029-118581 bp Feature: gene Location: 119455-119700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119515-119653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119515-119653 bp Feature: gene Location: 120303-120647 bp Feature: gene Location: 120718-121518 bp Feature: domain Description: YdcF-like Location: 121060-121492 bp Feature: domain Description: YdcF-like Location: 121060-121492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WYL (pfam13280), RVT-GII, Inhibitor_I9 (pfam05922), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280), FlgD_ig (pfam13860), FIVAR (pfam07554), FIDO (COG2184), YdcF-like (cl00630)

Seq: FOIN01000014.1 (56881 bp)
Overview 1 RT 1: 985-13986 bp Neighborhood of RT #1 [985, 14063] Glyco_hydro_20b NAGidase F5_F8_type_C F5_F8_type_C F5_F8_type_C F5_F8_type_C FIVAR FIVAR FIVAR FIVAR FIVAR AfuC CE2_N FIVAR CBM6_cellulase-like CBM6_cellulase-like FIVAR FIVAR FIVAR FIVAR RVT-GII INT_RitC_C_like INT_RitC_C_like Feature: gene Location: 985-5691 bp Feature: domain Description: Glyco_hydro_20b Location: 1114-1537 bp Feature: domain Description: Glyco_hydro_20b Location: 1114 -1537 bp Feature: domain Description: NAGidase Location: 1555-2461 bp Feature: domain Description: NAGidase Location: 1555-24 61 bp Feature: domain Description: F5_F8_type_C Location: 2989-3289 bp Feature: domain Description: F5_F8_type_C Location: 2989-3289 bp Feature: domain Description: F5_F8_type_C Location: 3397-3727 bp Feature: domain Description: F5_F8_type_C Location: 3397-3727 bp Feature: domain Description: F5_F8_type_C Location: 3874-4057 bp Feature: domain Description: F5_F8_type_C Location: 3874 -4 057 bp Feature: domain Description: F5_F8_type_C Location: 4129-4354 bp Feature: domain Description: F5_F8_type_C Location: 4 129-4 354 bp Feature: domain Description: FIVAR Location: 4537-4672 bp Feature: domain Description: FIVAR Location: 4 537-4 672 bp Feature: domain Description: FIVAR Location: 4702-4876 bp Feature: domain Description: FIVAR Location: 4 702-4 876 bp Feature: domain Description: FIVAR Location: 4912-5098 bp Feature: domain Description: FIVAR Location: 4 912-5098 bp Feature: domain Description: FIVAR Location: 5125-5299 bp Feature: domain Description: FIVAR Location: 5125-5299 bp Feature: domain Description: FIVAR Location: 5329-5512 bp Feature: domain Description: FIVAR Location: 5329-5512 bp Feature: gene Location: 7203-11879 bp Feature: domain Description: AfuC Location: 7344-8775 bp Feature: domain Description: AfuC Location: 734 4 -8775 bp Feature: domain Description: CE2_N Location: 8922-9147 bp Feature: domain Description: CE2_N Location: 8922-914 7 bp Feature: domain Description: FIVAR Location: 9606-9726 bp Feature: domain Description: FIVAR Location: 9606-9726 bp Feature: domain Description: CBM6_cellulase-like Location: 9870-10131 bp Feature: domain Description: CBM6_cellulase-like Location: 9870-10131 bp Feature: domain Description: CBM6_cellulase-like Location: 10557-10824 bp Feature: domain Description: CBM6_cellulase-like Location: 10557-10824 bp Feature: domain Description: FIVAR Location: 10908-11088 bp Feature: domain Description: FIVAR Location: 10908-11088 bp Feature: domain Description: FIVAR Location: 11118-11298 bp Feature: domain Description: FIVAR Location: 11118-11298 bp Feature: domain Description: FIVAR Location: 11376-11502 bp Feature: domain Description: FIVAR Location: 11376-11502 bp Feature: domain Description: FIVAR Location: 11532-11715 bp Feature: domain Description: FIVAR Location: 11532-11715 bp Feature: gene Location: 12474-13268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12675-13257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12675-13257 bp Feature: gene Location: 13261-13773 bp Feature: domain Description: INT_RitC_C_like Location: 13429-13768 bp Feature: domain Description: INT_RitC_C_like Location: 134 29-13768 bp Feature: gene Location: 13836-14063 bp Feature: domain Description: INT_RitC_C_like Location: 13839-13986 bp Feature: domain Description: INT_RitC_C_like Location: 13839-13986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_20b (pfam02838), NAGidase (pfam07555), F5_F8_type_C (pfam00754), FIVAR (pfam07554), AfuC (COG3669), CE2_N (pfam17996), CBM6_cellulase-like (cd04080), RVT-GII, INT_RitC_C_like (cd01182)