myRT

myRT report for GCA_900102645.1_IMG-taxon_2654588143_annotated_assembly

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Seq: FMYE01000009.1 (115761 bp)
Overview 1 RT 1: 18747-31023 bp Neighborhood of RT #1 [18747, 31139] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 18747-19571 bp Feature: domain Description: PDDEXK_2 Location: 18768-19446 bp Feature: domain Description: PDDEXK_2 Location: 1 8768-1 9446 bp Feature: gene Location: 19738-21945 bp Feature: gene Location: 22151-23281 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22472-23015 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22472-2301 5 bp Feature: gene Location: 23283-29240 bp Feature: domain Description: DUF4011 Location: 24513-25026 bp Feature: domain Description: DUF401 1 Location: 2451 3-25026 bp Feature: domain Description: DEXXQc_SF1 Location: 25365-26361 bp Feature: domain Description: DEXXQc_SF1 Location: 25365-26361 bp Feature: domain Description: DEXXQc_SF1 Location: 26793-27552 bp Feature: domain Description: DEXXQc_SF1 Location: 26793-27552 bp Feature: domain Description: TIGR00376 Location: 27681-28071 bp Feature: domain Description: TIGR00376 Location: 27681 -28071 bp Feature: domain Description: MTES_1575 Location: 28224-28509 bp Feature: domain Description: MTES_1 575 Location: 28224-28509 bp Feature: domain Description: DUF3320 Location: 28749-28890 bp Feature: domain Description: DUF3320 Location: 28749-28890 bp Feature: gene Location: 29337-31139 bp Feature: domain Description: rpsA Location: 29406-31023 bp Feature: domain Description: rpsA Location: 29406-31 023 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: FMYE01000001.1 (355089 bp)
Overview 1 RT 1: 322687-329329 bp Neighborhood of RT #1 [322687, 329385] REC RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 322687-324381 bp Feature: domain Description: REC Location: 323482-323725 bp Feature: domain Description: REC Location: 32 3482 -32 372 5 bp Feature: gene Location: 324390-325034 bp Feature: gene Location: 325012-327231 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 325213-325798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 52 13-32 5798 bp Feature: gene Location: 327480-328472 bp Feature: domain Description: Phage_int_SAM_5 Location: 327540-327795 bp Feature: domain Description: Phage_int_SAM_5 Location: 32 7540-32 7795 bp Feature: domain Description: INTN1_C_like Location: 327870-328377 bp Feature: domain Description: INTN1_C_like Location: 32 7870-32 8377 bp Feature: gene Location: 328807-329385 bp Feature: domain Description: NGN_SP_UpxY Location: 328885-329167 bp Feature: domain Description: NGN_SP_UpxY Location: 32 8885-32 9167 bp Feature: domain Description: KOW_NusG Location: 329218-329329 bp Feature: domain Description: KOW_NusG Location: 32 92 18-32 932 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT REC (smart00448), RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: FMYE01000011.1 (107738 bp)
Overview 1 RT 1: 2-6047 bp Neighborhood of RT #1 [2, 6253] DDE_Tnp_ISL3 RVT-UG24 UT HTH_XRE Feature: gene Location: 2-340 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 8-320 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 8-3 20 bp Feature: gene Location: 485-1081 bp Feature: gene Location: 1059-4493 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 1578-2040 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 1578-2040 bp Feature: gene Location: 4706-5551 bp Feature: domain Description: UT Location: 4736-5543 bp Feature: domain Description: UT Location: 473 6-5543 bp Feature: gene Location: 5846-6253 bp Feature: domain Description: HTH_XRE Location: 5885-6047 bp Feature: domain Description: HTH_XRE Location: 5885-6047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), RVT-UG24, UT (pfam03253), HTH_XRE (smart00530)

Seq: FMYE01000018.1 (83206 bp)
Overview 1 RT 1: 51769-57667 bp Neighborhood of RT #1 [51769, 57667] RVT-DGRs Feature: gene Location: 51769-51993 bp Feature: gene Location: 51995-54742 bp Feature: gene Location: 55049-56368 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55235-55832 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 55235-55832 bp Feature: gene Location: 56393-56602 bp Feature: gene Location: 56615-57667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs