myRT

myRT report for GCA_900103735.1_IMG-taxon_2595698204_annotated_assembly

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Seq: FMXE01000078.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00077.77, whole genome shotgun sequence (1404 bp)
Overview 1 RT 1: 111-1302 bp Neighborhood of RT #1 [111, 1403] RVT-GII GIIM Feature: gene Location: 111-1403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396-1 044 bp Feature: domain Description: GIIM Note: maturase Location: 1125-1302 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 25-1 302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FMXE01000074.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00073.73, whole genome shotgun sequence (1980 bp)
Overview 1 RT 1: 43-1375 bp Neighborhood of RT #1 [43, 1977] RVT-UG28b Feature: gene Location: 43-1977 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 670-1375 bp Feature: RT Description: RVT-UG2 8b Note: UG2 8b RT Location: 670-1375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b

Seq: FMXE01000066.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00065.65, whole genome shotgun sequence (3312 bp)
Overview 1 RT 1: 16-3068 bp Neighborhood of RT #1 [16, 3139] RVT-GII GIIM VirE_N PriCT_2 Feature: gene Location: 16-204 bp Feature: gene Location: 315-458 bp Feature: gene Location: 582-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 948-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1728-1896 bp Feature: domain Description: GIIM Note: maturase Location: 1728-1896 bp Feature: gene Location: 1985-3139 bp Feature: domain Description: VirE_N Location: 2294-2666 bp Feature: domain Description: VirE_N Location: 2294-2666 bp Feature: domain Description: PriCT_2 Location: 2849-3068 bp Feature: domain Description: PriCT_2 Location: 2849-3 068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), VirE_N (pfam08800), PriCT_2 (pfam08707)

Seq: FMXE01000051.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00050.50, whole genome shotgun sequence (18683 bp)
Overview 1 RT 1: 17115-18648 bp Neighborhood of RT #1 [17115, 18680] SPOUT_MTase FAS1 RVT-GII Feature: gene Location: 17115-17588 bp Feature: domain Description: SPOUT_MTase Location: 17118-17580 bp Feature: domain Description: SPOUT_MTase Location: 17118-17580 bp Feature: gene Location: 17749-18276 bp Feature: domain Description: FAS1 Location: 17848-18274 bp Feature: domain Description: FAS1 Location: 1784 8-18274 bp Feature: gene Location: 18372-18680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18396-18648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18396-1864 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SPOUT_MTase (pfam02590), FAS1 (smart00554), RVT-GII

Seq: FMXE01000060.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00059.59, whole genome shotgun sequence (6985 bp)
Overview 1 RT 1: 1-2765 bp Neighborhood of RT #1 [1, 2818] RVT-GII OmpA OmpA Feature: gene Location: 1-249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-214 bp Feature: gene Location: 251-403 bp Feature: gene Location: 425-2818 bp Feature: domain Description: OmpA Location: 1997-2324 bp Feature: domain Description: OmpA Location: 1997-2324 bp Feature: domain Description: OmpA Location: 2384-2765 bp Feature: domain Description: OmpA Location: 2384-2765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, OmpA (pfam00691)

Seq: FMXE01000003.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00002.2, whole genome shotgun sequence (248786 bp)
Overview 1 RT 1: 36667-40076 bp Neighborhood of RT #1 [36667, 40087] YfmG recQ RVT-DGRs YfmG Feature: gene Location: 36667-37497 bp Feature: domain Description: YfmG Location: 36805-37486 bp Feature: domain Description: YfmG Location: 36 805-37486 bp Feature: gene Location: 37603-38061 bp Feature: domain Description: recQ Location: 37819-38035 bp Feature: domain Description: recQ Location: 37819-38035 bp Feature: gene Location: 38058-39125 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38268-38853 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3826 8-38853 bp Feature: gene Location: 39207-39335 bp Feature: gene Location: 39332-40087 bp Feature: domain Description: YfmG Location: 39413-40076 bp Feature: domain Description: YfmG Location: 39413-40076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), recQ (TIGR01389), RVT-DGRs

Seq: FMXE01000025.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00024.24, whole genome shotgun sequence (74657 bp)
Overview 1 RT 1: 72461-74316 bp Neighborhood of RT #1 [72461, 74606] PRK10475 GH16_laminarinase_like GH16_beta_agarase RVT-GII GIIM Feature: gene Location: 72461-73192 bp Feature: domain Description: PRK10475 Location: 72464-73181 bp Feature: domain Description: PRK1047 5 Location: 7 2464-7 3181 bp Feature: gene Location: 73225-73758 bp Feature: domain Description: GH16_laminarinase_like Location: 73324-73546 bp Feature: domain Description: GH16_laminarinase_like Location: 7 3324-7 3546 bp Feature: domain Description: GH16_beta_agarase Location: 73549-73744 bp Feature: domain Description: GH16_beta_agarase Location: 7 3549-7 37 44 bp Feature: gene Location: 73782-74606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73809-74058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 3809-7 4058 bp Feature: domain Description: GIIM Note: maturase Location: 74112-74316 bp Feature: domain Description: GIIM Note: maturase Location: 7 4112-7 4316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10475 (23S rRNA pseudouridine(2604) synthase RluF), GH16_laminarinase_like (cd08023), GH16_beta_agarase (cd02178), RVT-GII, GIIM (pfam08388)

Seq: FMXE01000059.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00058.58, whole genome shotgun sequence (7273 bp)
Overview 1 RT 1: 52-4435 bp Neighborhood of RT #1 [52, 4731] RVT-GII GIIM Fur DUF5118 DUF5117 ZnMc_MMP_like_2 DUF4953 Feature: gene Location: 52-1143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79-328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79-328 bp Feature: domain Description: GIIM Note: maturase Location: 382-586 bp Feature: domain Description: GIIM Note: maturase Location: 38 2-58 6 bp Feature: gene Location: 1705-2118 bp Feature: domain Description: Fur Location: 1726-2116 bp Feature: domain Description: Fur Location: 1726-2116 bp Feature: gene Location: 2197-4731 bp Feature: domain Description: DUF5118 Location: 2371-2518 bp Feature: domain Description: DUF5118 Location: 2371-2518 bp Feature: domain Description: DUF5117 Location: 2542-3103 bp Feature: domain Description: DUF5117 Location: 2542-3103 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 3136-3496 bp Feature: domain Description: ZnMc_MMP_like_2 Location: 3136-3496 bp Feature: domain Description: DUF4953 Location: 3511-4435 bp Feature: domain Description: DUF4953 Location: 3511-4435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Fur (COG0735), DUF5118 (pfam17162), DUF5117 (pfam17148), ZnMc_MMP_like_2 (cd04276), DUF4953 (pfam16313)

Seq: FMXE01000014.1 Algoriphagus alkaliphilus strain DSM 22703 genome assembly, contig: LV86DRAFT_scaffold00013.13, whole genome shotgun sequence (119530 bp)
Overview 1 RT 1: 116045-119372 bp Neighborhood of RT #1 [116045, 119527] TPR_12 TPR_12 TPR_12 COG4585 CitB RVT-GII GIIM Feature: gene Location: 116045-118000 bp Feature: domain Description: TPR_12 Location: 116312-116480 bp Feature: domain Description: TPR_12 Location: 116312-116480 bp Feature: domain Description: TPR_12 Location: 116552-116732 bp Feature: domain Description: TPR_12 Location: 116552-116732 bp Feature: domain Description: TPR_12 Location: 116768-116975 bp Feature: domain Description: TPR_12 Location: 116768-1169 75 bp Feature: domain Description: COG4585 Location: 117137-117989 bp Feature: domain Description: COG4585 Location: 117137-1179 89 bp Feature: gene Location: 117997-118614 bp Feature: domain Description: CitB Location: 118009-118612 bp Feature: domain Description: CitB Location: 118009 -118612 bp Feature: gene Location: 118679-119527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118688-119078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118688-119 078 bp Feature: domain Description: GIIM Note: maturase Location: 119159-119372 bp Feature: domain Description: GIIM Note: maturase Location: 119 159 -119 372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_12 (pfam13424), COG4585 (Signal transduction histidine kinase ), CitB (TIGR02484), RVT-GII, GIIM (pfam08388)