myRT

myRT report for GCA_900103795.1_IMG-taxon_2636416078_annotated_assembly

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Seq: LT629704.1 (6377174 bp)
Overview 1 RT 1: 1415864-1424298 bp 2 RT 2: 4863035-4867514 bp 3 RT 3: 5111415-5122398 bp Neighborhood of RT #1 [1415864, 1424363] Peptidase_C14 RVT-UG1 INT_Rci_Hp1_C Neighborhood of RT #2 [4863035, 4867567] Avd_like RVT-DGRs Asp_Ala_antiprt Glu-decarb-GAD Neighborhood of RT #3 [5111415, 5122427] autotrans_barl PinE RVT-GII DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 1415864-1416487 bp Feature: gene Location: 1417104-1417424 bp Feature: domain Description: Peptidase_C14 Location: 1417113-1417377 bp Feature: domain Description: Peptidase_C1 4 Location: 1 41 71 1 3-1 41 7377 bp Feature: gene Location: 1418833-1422684 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1419496-1420042 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 41 9496-1 420042 bp Feature: gene Location: 1422955-1423176 bp Feature: gene Location: 1423290-1424363 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1423797-1424298 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 423797-1 424298 bp Feature: gene Location: 4863035-4863346 bp Feature: gene Location: 4863343-4863699 bp Feature: domain Description: Avd_like Location: 4863370-4863673 bp Feature: domain Description: Avd_like Location: 4863370-4863673 bp Feature: gene Location: 4863945-4865030 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4864206-4864821 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4864206-4864821 bp Feature: gene Location: 4865122-4866153 bp Feature: domain Description: Asp_Ala_antiprt Location: 4865305-4866106 bp Feature: domain Description: Asp_Ala_antiprt Location: 4865305-48661 06 bp Feature: gene Location: 4866146-4867567 bp Feature: domain Description: Glu-decarb-GAD Location: 4866239-4867514 bp Feature: domain Description: Glu-decarb-GAD Location: 4866239-486751 4 bp Feature: gene Location: 5111415-5115404 bp Feature: domain Description: autotrans_barl Location: 5114049-5115402 bp Feature: domain Description: autotrans_barl Location: 51 1 4049-51 1 5402 bp Feature: gene Location: 5115568-5116140 bp Feature: domain Description: PinE Location: 5115571-5116111 bp Feature: domain Description: PinE Location: 51 1 5571 -51 1 61 1 1 bp Feature: gene Location: 5116513-5117448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5116627-5117131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 6627-51 1 71 31 bp Feature: gene Location: 5117447-5117965 bp Feature: gene Location: 5117978-5118595 bp Feature: gene Location: 5118651-5118794 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5118657-5118768 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 51 1 8657-51 1 8768 bp Feature: gene Location: 5118916-5120145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5119117-5119768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 91 1 7-51 1 9768 bp Feature: domain Description: GIIM Note: maturase Location: 5119846-5120050 bp Feature: domain Description: GIIM Note: maturase Location: 51 1 9846-51 20050 bp Feature: gene Location: 5120609-5122030 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5120756-5120966 bp Feature: domain Description: LZ_Tnp_IS66 Location: 51 20756-51 20966 bp Feature: domain Description: zf-IS66 Location: 5120996-5121122 bp Feature: domain Description: zf-IS66 Location: 51 20996-51 21 1 22 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5121164-5121989 bp Feature: domain Description: DDE_Tnp_IS66 Location: 51 21 1 64-51 21 989 bp Feature: gene Location: 5122092-5122427 bp Feature: domain Description: TnpB_IS66 Location: 5122110-5122398 bp Feature: domain Description: TnpB_IS66 Location: 51 221 1 0-51 22398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_C14 (pfam00656), RVT-UG1, INT_Rci_Hp1_C (cd00796), Avd_like (cd16376), RVT-DGRs, Asp_Ala_antiprt (TIGR03802), Glu-decarb-GAD (TIGR01788), autotrans_barl (TIGR01414), PinE (COG1961), RVT-GII
DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)