myRT

myRT report for GCA_900104665.1_PRJEB16357

Download annotations/find similar RTs

Seq: LT629969.1 (1142437 bp)
Overview 1 RT 1: 294458-302673 bp Neighborhood of RT #1 [294458, 302735] RVT-GII xerS INT_RitA_C_like INT_RitB_C_like INT_RitC_C_like RVT-GII GIIM HTH_XRE COG5421 Feature: gene Location: 294458-295189 bp Feature: gene Location: 295736-295912 bp Feature: gene Location: 295776-296411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295977-296358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295977-296358 bp Feature: gene Location: 296551-297771 bp Feature: domain Description: xerS Location: 296818-297100 bp Feature: domain Description: xerS Location: 29681 8-2971 00 bp Feature: domain Description: INT_RitA_C_like Location: 297190-297733 bp Feature: domain Description: INT_RitA_C_like Location: 2971 90-297733 bp Feature: gene Location: 297860-298729 bp Feature: domain Description: INT_RitB_C_like Location: 298085-298658 bp Feature: domain Description: INT_RitB_C_like Location: 298085-298658 bp Feature: gene Location: 298881-299729 bp Feature: domain Description: INT_RitC_C_like Location: 299091-299640 bp Feature: domain Description: INT_RitC_C_like Location: 299091 -299640 bp Feature: gene Location: 299939-300541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299945-300062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 299945-300062 bp Feature: domain Description: GIIM Note: maturase Location: 300116-300335 bp Feature: domain Description: GIIM Note: maturase Location: 3001 1 6-300335 bp Feature: gene Location: 300628-300912 bp Feature: domain Description: HTH_XRE Location: 300679-300856 bp Feature: domain Description: HTH_XRE Location: 300679-300856 bp Feature: gene Location: 301092-302735 bp Feature: domain Description: COG5421 Location: 301599-302673 bp Feature: domain Description: COG5421 Location: 301 599-302673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, xerS (PRK05084), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), INT_RitC_C_like (cd01182), GIIM (pfam08388), HTH_XRE (smart00530), COG5421 (Transposase )

Seq: LT629967.1 (661371 bp)
Overview 1 RT 1: 416692-421561 bp Neighborhood of RT #1 [416692, 421563] DUF5011 HdeD RVT-GII RVT-GII GIIM HTH_XRE ispF Feature: gene Location: 416692-417717 bp Feature: domain Description: DUF5011 Location: 416887-417049 bp Feature: domain Description: DUF5011 Location: 416887-417049 bp Feature: gene Location: 417869-418471 bp Feature: domain Description: HdeD Location: 417872-418397 bp Feature: domain Description: HdeD Location: 417872 -418397 bp Feature: gene Location: 419037-419618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419238-419607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4192 38-419607 bp Feature: gene Location: 419702-420304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419708-419825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419708-41982 5 bp Feature: domain Description: GIIM Note: maturase Location: 419879-420089 bp Feature: domain Description: GIIM Note: maturase Location: 419879-42 0089 bp Feature: gene Location: 420389-420892 bp Feature: domain Description: HTH_XRE Location: 420401-420572 bp Feature: domain Description: HTH_XRE Location: 42 0401-42 0572 bp Feature: gene Location: 421090-421563 bp Feature: domain Description: ispF Location: 421093-421561 bp Feature: domain Description: ispF Location: 42 1093-42 1561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5011 (pfam16403), HdeD (COG3247), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), ispF (TIGR00151)