myRT

myRT report for GCA_900104695.1_IMG-taxon_2690316367_annotated_assembly

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Seq: FNSW01000001.1 (5417369 bp)
Overview 1 RT 1: 1250490-1256281 bp 2 RT 2: 1627929-1631666 bp 3 RT 3: 1893191-1896236 bp 4 RT 4: 2887410-2891326 bp 5 RT 5: 4390824-4400287 bp 6 RT 6: 5213380-5217251 bp Neighborhood of RT #1 [1250490, 1256281] RND_mfp HlyD_3 RND_mfp 8a0102 RVT-GII GIIM Neighborhood of RT #2 [1627929, 1631666] SGNH_hydrolase_like_2 IclR RVT-GII GIIM Neighborhood of RT #3 [1893191, 1896236] ba3_CcO_II_C RVT-GII GIIM Neighborhood of RT #4 [2887410, 2891326] TrkA_C SLH SLH RVT-GII GIIM DUF5372 Neighborhood of RT #5 [4390824, 4400295] Aes Mor RVT-GII DUF772 DDE_Tnp_1_6 INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM PleD PleD DUF2203 Neighborhood of RT #6 [5213380, 5217251] RVT-GII GIIM DDE_Tnp_IS240 Feature: gene Location: 1250490-1252217 bp Feature: domain Description: RND_mfp Location: 1250613-1250859 bp Feature: domain Description: RND_mfp Location: 1 25061 3-1 250859 bp Feature: domain Description: HlyD_3 Location: 1250883-1251168 bp Feature: domain Description: HlyD_3 Location: 1 250883-1 251 1 68 bp Feature: domain Description: RND_mfp Location: 1251219-1251414 bp Feature: domain Description: RND_mfp Location: 1 251 21 9-1 251 41 4 bp Feature: domain Description: 8a0102 Location: 1251441-1252014 bp Feature: domain Description: 8a01 02 Location: 1 251 441 -1 25201 4 bp Feature: gene Location: 1252360-1252947 bp Feature: gene Location: 1253112-1254368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1253424-1254045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 253424-1 254045 bp Feature: domain Description: GIIM Note: maturase Location: 1254084-1254285 bp Feature: domain Description: GIIM Note: maturase Location: 1 254084-1 254285 bp Feature: gene Location: 1254634-1255224 bp Feature: gene Location: 1255226-1256281 bp Feature: gene Location: 1627929-1628606 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 1628010-1628595 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 1 62801 0-1 628595 bp Feature: gene Location: 1628660-1629409 bp Feature: domain Description: IclR Location: 1628687-1629395 bp Feature: domain Description: IclR Location: 1 628687-1 629395 bp Feature: gene Location: 1629696-1630862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1629918-1630539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 62991 8-1 630539 bp Feature: domain Description: GIIM Note: maturase Location: 1630578-1630779 bp Feature: domain Description: GIIM Note: maturase Location: 1 630578-1 630779 bp Feature: gene Location: 1630889-1631104 bp Feature: gene Location: 1631439-1631666 bp Feature: gene Location: 1893191-1893931 bp Feature: domain Description: ba3_CcO_II_C Location: 1893683-1893926 bp Feature: domain Description: ba3_CcO_II_C Location: 1 893683-1 893926 bp Feature: gene Location: 1893291-1894025 bp Feature: gene Location: 1894271-1895527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1894583-1895204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 894583-1 895204 bp Feature: domain Description: GIIM Note: maturase Location: 1895243-1895444 bp Feature: domain Description: GIIM Note: maturase Location: 1 895243-1 895444 bp Feature: gene Location: 1895602-1895994 bp Feature: gene Location: 1896009-1896236 bp Feature: gene Location: 2887410-2888144 bp Feature: domain Description: TrkA_C Location: 2887881-2888046 bp Feature: domain Description: TrkA_C Location: 2887881 -2888046 bp Feature: gene Location: 2888579-2889367 bp Feature: domain Description: SLH Location: 2888744-2888864 bp Feature: domain Description: SLH Location: 2888744-2888864 bp Feature: domain Description: SLH Location: 2889137-2889269 bp Feature: domain Description: SLH Location: 28891 37-2889269 bp Feature: gene Location: 2889728-2890657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889743-2890334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889743-2890334 bp Feature: domain Description: GIIM Note: maturase Location: 2890373-2890574 bp Feature: domain Description: GIIM Note: maturase Location: 2890373-2890574 bp Feature: gene Location: 2890681-2890926 bp Feature: domain Description: DUF5372 Location: 2890693-2890909 bp Feature: domain Description: DUF5372 Location: 2890693-2890909 bp Feature: gene Location: 2890976-2891326 bp Feature: gene Location: 4390824-4391612 bp Feature: domain Description: Aes Location: 4390869-4391562 bp Feature: domain Description: Aes Location: 4390869-4391 562 bp Feature: gene Location: 4392108-4392464 bp Feature: domain Description: Mor Location: 4392201-4392453 bp Feature: domain Description: Mor Location: 4392201 -4392453 bp Feature: gene Location: 4392594-4394090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4392651-4392729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4392651 -4392729 bp Feature: domain Description: DUF772 Location: 4392885-4393113 bp Feature: domain Description: DUF772 Location: 4392885-43931 1 3 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4393707-4394061 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 4393707-4394061 bp Feature: gene Location: 4394230-4394367 bp Feature: gene Location: 4394498-4394800 bp Feature: gene Location: 4395397-4396383 bp Feature: domain Description: INT_RitB_C_like Location: 4395733-4396321 bp Feature: domain Description: INT_RitB_C_like Location: 4395733-4396321 bp Feature: gene Location: 4396370-4397380 bp Feature: domain Description: Phage_int_SAM_1 Location: 4396415-4396664 bp Feature: domain Description: Phage_int_SAM_1 Location: 439641 5-4396664 bp Feature: domain Description: INT_RitC_C_like Location: 4396748-4397300 bp Feature: domain Description: INT_RitC_C_like Location: 4396748-4397300 bp Feature: gene Location: 4397614-4398168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4397620-4397722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4397620-4397722 bp Feature: domain Description: GIIM Note: maturase Location: 4397773-4397977 bp Feature: domain Description: GIIM Note: maturase Location: 4397773-4397977 bp Feature: gene Location: 4398331-4399770 bp Feature: domain Description: PleD Location: 4398472-4399333 bp Feature: domain Description: PleD Location: 4398472-4399333 bp Feature: domain Description: PleD Location: 4399360-4399765 bp Feature: domain Description: PleD Location: 4399360-4399765 bp Feature: gene Location: 4399891-4400295 bp Feature: domain Description: DUF2203 Location: 4399903-4400287 bp Feature: domain Description: DUF2203 Location: 4399903-4400287 bp Feature: gene Location: 5213380-5213709 bp Feature: gene Location: 5214369-5214500 bp Feature: gene Location: 5214775-5216520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5215072-5215744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 5072-521 5744 bp Feature: domain Description: GIIM Note: maturase Location: 5215810-5216017 bp Feature: domain Description: GIIM Note: maturase Location: 521 581 0-521 601 7 bp Feature: gene Location: 5216611-5217102 bp Feature: domain Description: DDE_Tnp_IS240 Location: 5216641-5217031 bp Feature: domain Description: DDE_Tnp_IS240 Location: 521 6641 -521 7031 bp Feature: gene Location: 5217111-5217251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RND_mfp (TIGR01730), HlyD_3 (pfam13437), 8a0102 (TIGR00999), RVT-GII, GIIM (pfam08388), SGNH_hydrolase_like_2 (cd01834), IclR (pfam01614), ba3_CcO_II_C (cd13913), TrkA_C (pfam02080), SLH (pfam00395)
DUF5372 (pfam17342), Aes (COG0657), Mor (pfam08765), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), PleD (COG3706), DUF2203 (pfam09969)
DDE_Tnp_IS240 (pfam13610)