myRT

myRT report for GCA_900104795.1_IMG-taxon_2687453794_annotated_assembly

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Seq: FNTG01000001.1 (4761244 bp)
Overview 1 RT 1: 19499-26092 bp 2 RT 2: 3506288-3510041 bp 3 RT 3: 4167119-4175914 bp Neighborhood of RT #1 [19499, 26130] thyA RVT-UG7 HTH_XRE HTH_XRE Neighborhood of RT #2 [3506288, 3510041] GlxA GyrI-like RVT-Retrons PAAR_CT_2 Neighborhood of RT #3 [4167119, 4175916] LpxC DciA RVT_N RVT-GII GIIM HNHc PRK12904 argJ Feature: gene Location: 19499-20416 bp Feature: domain Description: thyA Location: 19616-20384 bp Feature: domain Description: thyA Location: 1 961 6-20384 bp Feature: gene Location: 20713-21435 bp Feature: gene Location: 21425-23116 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 21842-22265 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 21 842-22265 bp Feature: gene Location: 23807-25231 bp Feature: gene Location: 25651-26130 bp Feature: domain Description: HTH_XRE Location: 25693-25864 bp Feature: domain Description: HTH_XRE Location: 25693-25864 bp Feature: domain Description: HTH_XRE Location: 25933-26092 bp Feature: domain Description: HTH_XRE Location: 25933-26092 bp Feature: gene Location: 3506288-3507154 bp Feature: domain Description: GlxA Location: 3506315-3506633 bp Feature: domain Description: GlxA Location: 350631 5-3506633 bp Feature: domain Description: GyrI-like Location: 3506687-3507149 bp Feature: domain Description: GyrI-like Location: 3506687-35071 49 bp Feature: gene Location: 3507566-3507739 bp Feature: gene Location: 3507854-3508903 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3508001-3508640 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3508001 -3508640 bp Feature: gene Location: 3509184-3509441 bp Feature: domain Description: PAAR_CT_2 Location: 3509205-3509436 bp Feature: domain Description: PAAR_CT_2 Location: 3509205-3509436 bp Feature: gene Location: 3509511-3510041 bp Feature: gene Location: 4167119-4168036 bp Feature: domain Description: LpxC Location: 4167122-4168001 bp Feature: domain Description: LpxC Location: 41 671 22-41 68001 bp Feature: gene Location: 4168107-4168787 bp Feature: domain Description: DciA Location: 4168371-4168626 bp Feature: domain Description: DciA Location: 41 68371 -41 68626 bp Feature: gene Location: 4169810-4171510 bp Feature: domain Description: RVT_N Location: 4169867-4170104 bp Feature: domain Description: RVT_N Location: 41 69867-41 701 04 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4170155-4170803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 701 55-41 70803 bp Feature: domain Description: GIIM Note: maturase Location: 4170857-4171088 bp Feature: domain Description: GIIM Note: maturase Location: 41 70857-41 71 088 bp Feature: domain Description: HNHc Note: nucleases Location: 4171304-4171472 bp Feature: domain Description: HNHc Note: nucleases Location: 41 71 304-41 71 472 bp Feature: gene Location: 4171674-4174523 bp Feature: domain Description: PRK12904 Location: 4171725-4174515 bp Feature: domain Description: PRK1 2904 Location: 41 71 725-41 7451 5 bp Feature: gene Location: 4174675-4175916 bp Feature: domain Description: argJ Location: 4174714-4175914 bp Feature: domain Description: argJ Location: 41 7471 4-41 7591 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thyA (PRK13821), RVT-UG7, HTH_XRE (smart00530), GlxA (COG4977), GyrI-like (pfam06445), RVT-Retrons, PAAR_CT_2 (cd14744), LpxC (pfam03331), DciA, RVT_N (pfam13655)
RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK12904 (preprotein translocase subunit SecA; Reviewed), argJ (PRK05388)

Seq: FNTG01000002.1 (3623263 bp)
Overview 1 RT 1: 5047-13585 bp 2 RT 2: 705442-710950 bp Neighborhood of RT #1 [5047, 14832] LysR Acetyltransf_1 RVT-GII RVT-GII COG3547 KAP_NTPase Neighborhood of RT #2 [705442, 710967] MFS_CitA M20_Acy1-like RVT-GII LysR Feature: gene Location: 5047-5958 bp Feature: domain Description: LysR Location: 5080-5950 bp Feature: domain Description: LysR Location: 5080-5950 bp Feature: gene Location: 6387-6794 bp Feature: domain Description: Acetyltransf_1 Location: 6453-6741 bp Feature: domain Description: Acetyltransf_1 Location: 6453-6741 bp Feature: gene Location: 7024-8502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7435-8122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7435-812 2 bp Feature: gene Location: 8499-8828 bp Feature: gene Location: 8832-9251 bp Feature: gene Location: 9347-10825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9758-10445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9758-10445 bp Feature: gene Location: 11172-12194 bp Feature: domain Description: COG3547 Location: 11193-12138 bp Feature: domain Description: COG3547 Location: 11193-12 138 bp Feature: gene Location: 12622-14832 bp Feature: domain Description: KAP_NTPase Location: 12679-13585 bp Feature: domain Description: KAP_NTPase Location: 12 679-13585 bp Feature: gene Location: 705442-706818 bp Feature: domain Description: MFS_CitA Location: 705583-706798 bp Feature: domain Description: MFS_CitA Location: 705583-706798 bp Feature: gene Location: 706826-708016 bp Feature: domain Description: M20_Acy1-like Location: 706883-708002 bp Feature: domain Description: M2 0_Acy1-like Location: 706883-708002 bp Feature: gene Location: 708114-709592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 708525-709212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70852 5-7092 12 bp Feature: gene Location: 709688-709984 bp Feature: gene Location: 710059-710967 bp Feature: domain Description: LysR Location: 710062-710950 bp Feature: domain Description: LysR Location: 710062 -710950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), Acetyltransf_1 (pfam00583), RVT-GII, COG3547 (Transposase ), KAP_NTPase (pfam07693), MFS_CitA (cd17368), M20_Acy1-like (cd08660)

Seq: FNTG01000004.1 (235116 bp)
Overview 1 RT 1: 140094-145547 bp Neighborhood of RT #1 [140094, 145606] Met_dep_hydrolase_A MFS_PcaK_like RVT-GII KOG2108 KOG2108 KOG2108 Feature: gene Location: 140094-141326 bp Feature: domain Description: Met_dep_hydrolase_A Location: 140232-141255 bp Feature: domain Description: Met_dep_hydrolase_A Location: 14023 2-141255 bp Feature: gene Location: 141488-141616 bp Feature: domain Description: MFS_PcaK_like Location: 141500-141608 bp Feature: domain Description: MFS_PcaK_like Location: 141500-141608 bp Feature: gene Location: 141985-143463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142396-143083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423 96-143 083 bp Feature: gene Location: 143559-143840 bp Feature: gene Location: 144140-145606 bp Feature: domain Description: KOG2108 Location: 144212-144392 bp Feature: domain Description: KOG2108 Location: 144212-1443 92 bp Feature: domain Description: KOG2108 Location: 144710-144974 bp Feature: domain Description: KOG2108 Location: 144710-144974 bp Feature: domain Description: KOG2108 Location: 145397-145547 bp Feature: domain Description: KOG2108 Location: 1453 97-145547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Met_dep_hydrolase_A (cd01299), MFS_PcaK_like (cd17365), RVT-GII, KOG2108 (KOG2108, 3'-5' DNA helicase )

Seq: FNTG01000005.1 (200868 bp)
Overview 1 RT 1: 110906-115517 bp Neighborhood of RT #1 [110906, 115627] COG3666 DDE_Tnp_1 RVT-GII VirB11 Feature: gene Location: 110906-112357 bp Feature: domain Description: COG3666 Location: 110918-111389 bp Feature: domain Description: COG3666 Location: 110918-111389 bp Feature: domain Description: DDE_Tnp_1 Location: 111626-112292 bp Feature: domain Description: DDE_Tnp_1 Location: 111626-112292 bp Feature: gene Location: 112462-112740 bp Feature: gene Location: 112836-114314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113247-113934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11324 7-113934 bp Feature: gene Location: 114432-114578 bp Feature: gene Location: 114779-115627 bp Feature: domain Description: VirB11 Location: 114869-115517 bp Feature: domain Description: VirB11 Location: 114 869-115517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), RVT-GII, VirB11 (TIGR02788)