myRT

myRT report for GCA_900104875.1_IMG-taxon_2642422516_annotated_assembly

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Seq: FNSP01000006.1 (606504 bp)
Overview 1 RT 1: 385474-389297 bp Neighborhood of RT #1 [385474, 389344] clpP tig RVT_N RVT-GII GIIM HNH Feature: gene Location: 385474-386109 bp Feature: domain Description: clpP Location: 385528-386101 bp Feature: domain Description: clpP Location: 385528-3861 01 bp Feature: gene Location: 386201-387511 bp Feature: domain Description: tig Location: 386204-387482 bp Feature: domain Description: tig Location: 386204-387482 bp Feature: gene Location: 387641-389344 bp Feature: domain Description: RVT_N Location: 387698-387941 bp Feature: domain Description: RVT_N Location: 387698-387941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387986-388622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387986-388622 bp Feature: domain Description: GIIM Note: maturase Location: 388673-388907 bp Feature: domain Description: GIIM Note: maturase Location: 388673-388907 bp Feature: domain Description: HNH Note: nucleases Location: 389159-389297 bp Feature: domain Description: HNH Note: nucleases Location: 3891 59-389297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: FNSP01000004.1 (4354446 bp)
Overview 1 RT 1: 2929290-2932911 bp 2 RT 2: 3025299-3033045 bp Neighborhood of RT #1 [2929290, 2933069] PRiA4_ORF3 DDE_Tnp_IS66_C RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #2 [3025299, 3033047] PRK12488 Resolvase RVT-GII GIIM HNHc RVT_N RVT-GII PRK09692 Tar Feature: gene Location: 2929290-2929613 bp Feature: domain Description: PRiA4_ORF3 Location: 2929341-2929611 bp Feature: domain Description: PRiA4_ORF3 Location: 2 92 9341-2 92 9611 bp Feature: gene Location: 2929617-2929766 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2929623-2929725 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 92 962 3-2 92 972 5 bp Feature: gene Location: 2930365-2931183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930683-2931157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 930683-2 931157 bp Feature: gene Location: 2931321-2931608 bp Feature: gene Location: 2931666-2933069 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2931750-2931948 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 931750-2 931948 bp Feature: domain Description: zf-IS66 Location: 2931966-2932098 bp Feature: domain Description: zf-IS66 Location: 2 931966-2 932 098 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2932143-2932911 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 932 143-2 932 911 bp Feature: gene Location: 3025299-3026963 bp Feature: domain Description: PRK12488 Location: 3025329-3026961 bp Feature: domain Description: PRK12 488 Location: 302 532 9-302 6961 bp Feature: gene Location: 3027037-3027606 bp Feature: gene Location: 3027781-3028878 bp Feature: domain Description: Resolvase Location: 3027823-3028129 bp Feature: domain Description: Resolvase Location: 302 782 3-302 812 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3028144-3028210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 8144-302 82 10 bp Feature: domain Description: GIIM Note: maturase Location: 3028285-3028516 bp Feature: domain Description: GIIM Note: maturase Location: 302 82 85-302 8516 bp Feature: domain Description: HNHc Note: nucleases Location: 3028738-3028870 bp Feature: domain Description: HNHc Note: nucleases Location: 302 8738-302 8870 bp Feature: gene Location: 3029279-3030016 bp Feature: domain Description: RVT_N Location: 3029324-3029567 bp Feature: domain Description: RVT_N Location: 302 932 4-302 9567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3029612-3029993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 9612 -302 9993 bp Feature: gene Location: 3030634-3031083 bp Feature: domain Description: PRK09692 Location: 3030640-3031027 bp Feature: domain Description: PRK09692 Location: 3030640-303102 7 bp Feature: gene Location: 3031125-3033047 bp Feature: domain Description: Tar Location: 3031902-3033045 bp Feature: domain Description: Tar Location: 3031902 -3033045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRiA4_ORF3 (pfam07929), DDE_Tnp_IS66_C (pfam13817), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), PRK12488 (cation/acetate symporter), Resolvase (smart00857), GIIM (pfam08388), HNHc (smart00507)
RVT_N (pfam13655), PRK09692 (Integrase; provisional), Tar (COG0840)

Seq: FNSP01000003.1 (1080549 bp)
Overview 1 RT 1: 183891-188270 bp Neighborhood of RT #1 [183891, 188270] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 183891-184718 bp Feature: domain Description: ABC_phnC Location: 183921-184635 bp Feature: domain Description: ABC_phnC Location: 183 921-18463 5 bp Feature: gene Location: 185061-185702 bp Feature: domain Description: DUF772 Location: 185211-185406 bp Feature: domain Description: DUF772 Location: 185211-185406 bp Feature: gene Location: 186091-187359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186304-186961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1863 04-186961 bp Feature: domain Description: GIIM Note: maturase Location: 187039-187261 bp Feature: domain Description: GIIM Note: maturase Location: 18703 9-187261 bp Feature: gene Location: 187509-187907 bp Feature: gene Location: 188091-188270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: FNSP01000007.1 (96444 bp)
Overview 1 RT 1: 89237-96305 bp Neighborhood of RT #1 [89237, 96337] PAS COG4191 PRK08162 RVT_N RVT-GII Resolvase RVT-GII GIIM HNHc LZ_Tnp_IS66 zf-IS66 Feature: gene Location: 89237-90739 bp Feature: domain Description: PAS Location: 89603-89753 bp Feature: domain Description: PAS Location: 89603-89753 bp Feature: domain Description: COG4191 Location: 89879-90677 bp Feature: domain Description: COG4 191 Location: 89879-90677 bp Feature: gene Location: 90998-92620 bp Feature: domain Description: PRK08162 Location: 91004-92615 bp Feature: domain Description: PRK08162 Location: 91004 -92615 bp Feature: gene Location: 93396-94133 bp Feature: domain Description: RVT_N Location: 93441-93684 bp Feature: domain Description: RVT_N Location: 934 4 1-93684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93729-94110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93729-94 110 bp Feature: gene Location: 94534-95631 bp Feature: domain Description: Resolvase Location: 94576-94882 bp Feature: domain Description: Resolvase Location: 94 576-94 882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94897-94963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94 897-94 963 bp Feature: domain Description: GIIM Note: maturase Location: 95038-95269 bp Feature: domain Description: GIIM Note: maturase Location: 95038-95269 bp Feature: domain Description: HNHc Note: nucleases Location: 95491-95623 bp Feature: domain Description: HNHc Note: nucleases Location: 954 91-95623 bp Feature: gene Location: 95840-96337 bp Feature: domain Description: LZ_Tnp_IS66 Location: 95939-96158 bp Feature: domain Description: LZ_Tnp_IS66 Location: 95939-96158 bp Feature: domain Description: zf-IS66 Location: 96179-96305 bp Feature: domain Description: zf-IS66 Location: 96179-96305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS (smart00091), COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system ), PRK08162 (acyl-CoA synthetase; Validated), RVT_N (pfam13655), RVT-GII, Resolvase (smart00857), GIIM (pfam08388), HNHc (smart00507), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)