myRT

myRT report for GCA_900105325.1_IMG-taxon_2639762561_annotated_assembly

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Seq: FNSU01000002.1 (400475 bp)
Overview 1 RT 1: 156020-160354 bp 2 RT 2: 237100-240132 bp Neighborhood of RT #1 [156020, 160354] RVT-Retrons HTH_MARR Neighborhood of RT #2 [237100, 240132] COG3618 RVT-GII RVT-GII Feature: gene Location: 156020-156289 bp Feature: gene Location: 156388-156522 bp Feature: gene Location: 157263-158429 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 157524-158166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 57524-1 581 66 bp Feature: gene Location: 158619-159920 bp Feature: domain Description: HTH_MARR Location: 159642-159804 bp Feature: domain Description: HTH_MARR Location: 1 59642-1 59804 bp Feature: gene Location: 160181-160354 bp Feature: gene Location: 237100-237843 bp Feature: gene Location: 237880-238893 bp Feature: domain Description: COG3618 Location: 237934-238885 bp Feature: domain Description: COG361 8 Location: 237934-238885 bp Feature: gene Location: 238923-239063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238935-239031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238935-239031 bp Feature: gene Location: 239187-239381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239202-239343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239202-239343 bp Feature: gene Location: 239556-239768 bp Feature: gene Location: 239965-240132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_MARR (smart00347), COG3618 (Predicted metal-dependent hydrolase, TIM-barrel fold ), RVT-GII

Seq: FNSU01000003.1 (4577277 bp)
Overview 1 RT 1: 3763353-3771612 bp Neighborhood of RT #1 [3763353, 3771662] COG3178 RVT_N RVT-GII GIIM HNH LptD PRK10770 Feature: gene Location: 3763353-3764378 bp Feature: domain Description: COG3178 Location: 3763368-3764367 bp Feature: domain Description: COG3178 Location: 3763368-3764367 bp Feature: gene Location: 3765193-3765357 bp Feature: gene Location: 3765682-3767382 bp Feature: domain Description: RVT_N Location: 3765739-3765982 bp Feature: domain Description: RVT_N Location: 3765739-3765982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3766027-3766663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376602 7-3766663 bp Feature: domain Description: GIIM Note: maturase Location: 3766714-3766948 bp Feature: domain Description: GIIM Note: maturase Location: 3766714-3766948 bp Feature: domain Description: HNH Note: nucleases Location: 3767200-3767338 bp Feature: domain Description: HNH Note: nucleases Location: 37672 00-3767338 bp Feature: gene Location: 3767573-3770347 bp Feature: domain Description: LptD Location: 3767795-3770330 bp Feature: domain Description: LptD Location: 3767795-3770330 bp Feature: gene Location: 3770322-3771662 bp Feature: domain Description: PRK10770 Location: 3770406-3771612 bp Feature: domain Description: PRK10770 Location: 3770406-3771612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: FNSU01000001.1 (1550777 bp)
Overview 1 RT 1: 162007-170140 bp 2 RT 2: 192542-197202 bp 3 RT 3: 1469159-1472404 bp 4 RT 4: 1507511-1510607 bp Neighborhood of RT #1 [162007, 170307] DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 RVT-GII DUF4096 Neighborhood of RT #2 [192542, 197774] PRK10276 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Neighborhood of RT #3 [1469159, 1472430] RVT-GII RVT-GII AraJ Neighborhood of RT #4 [1507511, 1510607] MhpC MhpC DUF4189 RVT-GII RVT-GII Feature: gene Location: 162007-162489 bp Feature: gene Location: 162670-162882 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 162742-162856 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 162742-162856 bp Feature: gene Location: 163406-164812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163724-164387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 724-1643 87 bp Feature: domain Description: GIIM Note: maturase Location: 164456-164666 bp Feature: domain Description: GIIM Note: maturase Location: 164456-164666 bp Feature: gene Location: 165322-166128 bp Feature: domain Description: LZ_Tnp_IS66 Location: 165409-165619 bp Feature: domain Description: LZ_Tnp_IS66 Location: 165409-165619 bp Feature: domain Description: zf-IS66 Location: 165649-165772 bp Feature: domain Description: zf-IS66 Location: 165649-165772 bp Feature: domain Description: DDE_Tnp_IS66 Location: 165817-166069 bp Feature: domain Description: DDE_Tnp_IS66 Location: 165817-166069 bp Feature: gene Location: 166147-166506 bp Feature: domain Description: TnpB_IS66 Location: 166177-166468 bp Feature: domain Description: TnpB_IS66 Location: 166177-166468 bp Feature: gene Location: 166853-168181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167357-168047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673 57-168047 bp Feature: gene Location: 169309-169533 bp Feature: gene Location: 169906-170307 bp Feature: domain Description: DUF4096 Location: 169927-170140 bp Feature: domain Description: DUF4096 Location: 169927-170140 bp Feature: gene Location: 192542-192976 bp Feature: domain Description: PRK10276 Location: 192590-192956 bp Feature: domain Description: PRK10276 Location: 192590-192956 bp Feature: gene Location: 193116-194276 bp Feature: domain Description: SF2_C_SNF Location: 193734-194112 bp Feature: domain Description: SF2_C_SNF Location: 193 73 4-194112 bp Feature: gene Location: 194443-196161 bp Feature: domain Description: RVT_N Location: 194500-194737 bp Feature: domain Description: RVT_N Location: 194500-19473 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194788-195439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194788-19543 9 bp Feature: domain Description: GIIM Note: maturase Location: 195493-195724 bp Feature: domain Description: GIIM Note: maturase Location: 195493 -195724 bp Feature: domain Description: HNHc Note: nucleases Location: 195958-196114 bp Feature: domain Description: HNHc Note: nucleases Location: 195958-196114 bp Feature: gene Location: 196431-196559 bp Feature: gene Location: 196758-197774 bp Feature: domain Description: DEXHc_Snf Location: 196935-197202 bp Feature: domain Description: DEXHc_Snf Location: 19693 5-197202 bp Feature: gene Location: 1469159-1469374 bp Feature: gene Location: 1469567-1469980 bp Feature: gene Location: 1470276-1470500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1470279-1470498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1470279-1470498 bp Feature: gene Location: 1470644-1470826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1470647-1470791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1470647-1470791 bp Feature: gene Location: 1470969-1471298 bp Feature: gene Location: 1471399-1472430 bp Feature: domain Description: AraJ Location: 1471402-1472404 bp Feature: domain Description: AraJ Location: 1471402-1472404 bp Feature: gene Location: 1507511-1508629 bp Feature: domain Description: MhpC Location: 1507715-1508042 bp Feature: domain Description: MhpC Location: 1507715-1508042 bp Feature: domain Description: MhpC Location: 1508138-1508255 bp Feature: domain Description: MhpC Location: 150813 8-1508255 bp Feature: domain Description: DUF4189 Location: 1508432-1508573 bp Feature: domain Description: DUF4189 Location: 150843 2-1508573 bp Feature: gene Location: 1508795-1509061 bp Feature: gene Location: 1509272-1509670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509476-1509659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509476-1509659 bp Feature: gene Location: 1509667-1510176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509673-1510165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1509673 -1510165 bp Feature: gene Location: 1510202-1510411 bp Feature: gene Location: 1510422-1510607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), DUF4096 (pfam13340), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), SF2_C_SNF (cd18793)
RVT_N (pfam13655), HNHc (smart00507), DEXHc_Snf (cd17919), AraJ (COG2814), MhpC (COG0596), DUF4189 (pfam13827)

Seq: FNSU01000004.1 (742786 bp)
Overview 1 RT 1: 686022-691164 bp Neighborhood of RT #1 [686022, 691164] DUF808 RVT-Retrons Feature: gene Location: 686022-686939 bp Feature: domain Description: DUF808 Location: 686034-686898 bp Feature: domain Description: DUF808 Location: 686034 -686898 bp Feature: gene Location: 687114-687932 bp Feature: gene Location: 688208-689323 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 688346-688913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 68834 6-688913 bp Feature: gene Location: 689396-689650 bp Feature: gene Location: 690343-691164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF808 (pfam05661), RVT-Retrons