myRT

myRT report for GCA_900106065.1_IMG-taxon_2636416004_annotated_assembly

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Seq: LT629796.1 (7041758 bp)
Overview 1 RT 1: 2264925-2270225 bp 2 RT 2: 4159937-4167605 bp 3 RT 3: 6126427-6133228 bp 4 RT 4: 6307956-6313288 bp Neighborhood of RT #1 [2264925, 2270239] ABC_phnC IS5 RVT-GII GIIM IS5 PRK10431 PRK10319 Neighborhood of RT #2 [4159937, 4167610] PRK12488 Resolvase RVT-GII GIIM HNHc RVT_N RVT-GII PRK06156 RhtB Neighborhood of RT #3 [6126427, 6133233] DUF2790 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII OprD Neighborhood of RT #4 [6307956, 6313288] COG4584 RVT-G2L4 Feature: gene Location: 2264925-2265752 bp Feature: domain Description: ABC_phnC Location: 2264955-2265669 bp Feature: domain Description: ABC_phnC Location: 2264955-2265669 bp Feature: gene Location: 2266214-2266753 bp Feature: domain Description: IS5 Location: 2266403-2266730 bp Feature: domain Description: IS5 Location: 2266403-2266730 bp Feature: gene Location: 2267246-2268514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267459-2268116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2267459-22681 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 2268194-2268416 bp Feature: domain Description: GIIM Note: maturase Location: 22681 94-226841 6 bp Feature: gene Location: 2268586-2269044 bp Feature: domain Description: IS5 Location: 2268589-2269018 bp Feature: domain Description: IS5 Location: 2268589-226901 8 bp Feature: gene Location: 2269175-2270239 bp Feature: domain Description: PRK10431 Location: 2269241-2269607 bp Feature: domain Description: PRK1 0431 Location: 2269241 -2269607 bp Feature: domain Description: PRK10319 Location: 2269637-2270225 bp Feature: domain Description: PRK1 031 9 Location: 2269637-2270225 bp Feature: gene Location: 4159937-4161601 bp Feature: domain Description: PRK12488 Location: 4159967-4161599 bp Feature: domain Description: PRK1 2488 Location: 41 59967-41 61 599 bp Feature: gene Location: 4161675-4162244 bp Feature: gene Location: 4162419-4163516 bp Feature: domain Description: Resolvase Location: 4162461-4162767 bp Feature: domain Description: Resolvase Location: 41 62461 -41 62767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4162782-4162848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 62782-41 62848 bp Feature: domain Description: GIIM Note: maturase Location: 4162923-4163154 bp Feature: domain Description: GIIM Note: maturase Location: 41 62923-41 631 54 bp Feature: domain Description: HNHc Note: nucleases Location: 4163376-4163508 bp Feature: domain Description: HNHc Note: nucleases Location: 41 63376-41 63508 bp Feature: gene Location: 4163917-4164654 bp Feature: domain Description: RVT_N Location: 4163962-4164205 bp Feature: domain Description: RVT_N Location: 41 63962-41 64205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4164250-4164631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 64250-41 64631 bp Feature: gene Location: 4165034-4166773 bp Feature: domain Description: PRK06156 Location: 4165040-4166771 bp Feature: domain Description: PRK061 56 Location: 41 65040-41 66771 bp Feature: gene Location: 4166972-4167610 bp Feature: domain Description: RhtB Location: 4166993-4167605 bp Feature: domain Description: RhtB Location: 41 66993-41 67605 bp Feature: gene Location: 6126427-6126624 bp Feature: gene Location: 6126766-6127098 bp Feature: domain Description: DUF2790 Location: 6126808-6127084 bp Feature: domain Description: DUF2790 Location: 61 26808-61 27084 bp Feature: gene Location: 6127262-6127960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6127334-6127511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 27334-61 2751 1 bp Feature: domain Description: GIIM Note: maturase Location: 6127565-6127793 bp Feature: domain Description: GIIM Note: maturase Location: 61 27565-61 27793 bp Feature: gene Location: 6128380-6129924 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6128500-6128710 bp Feature: domain Description: LZ_Tnp_IS66 Location: 61 28500-61 2871 0 bp Feature: domain Description: zf-IS66 Location: 6128740-6128863 bp Feature: domain Description: zf-IS66 Location: 61 28740-61 28863 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6128908-6129763 bp Feature: domain Description: DDE_Tnp_IS66 Location: 61 28908-61 29763 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6129784-6129898 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 61 29784-61 29898 bp Feature: gene Location: 6129941-6130345 bp Feature: domain Description: TnpB_IS66 Location: 6130016-6130310 bp Feature: domain Description: TnpB_IS66 Location: 61 3001 6-61 3031 0 bp Feature: gene Location: 6130371-6131198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6130728-6131178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 30728-61 31 1 78 bp Feature: gene Location: 6131348-6131518 bp Feature: gene Location: 6131908-6133233 bp Feature: domain Description: OprD Location: 6132001-6133228 bp Feature: domain Description: OprD Location: 61 32001 -61 33228 bp Feature: gene Location: 6307956-6309464 bp Feature: domain Description: COG4584 Location: 6308004-6308790 bp Feature: domain Description: COG4584 Location: 6308004-6308790 bp Feature: gene Location: 6309559-6309819 bp Feature: gene Location: 6310947-6312227 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 6311193-6311778 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 631 1 1 93-631 1 778 bp Feature: gene Location: 6312262-6312456 bp Feature: gene Location: 6313070-6313288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), IS5 (COG3039), RVT-GII, GIIM (pfam08388), PRK10431 (N-acetylmuramoyl-l-alanine amidase II; Provisional), PRK10319 (N-acetylmuramoyl-L-alanine amidase AmiA), PRK12488 (cation/acetate symporter), Resolvase (smart00857), HNHc (smart00507), RVT_N (pfam13655)
PRK06156 (dipeptidase), RhtB (COG1280), DUF2790 (pfam10976), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), OprD (pfam03573), COG4584 (Transposase )
RVT-G2L4