myRT

myRT report for GCA_900106505.1_PRJEB16342

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Seq: LT629821.1 (1041014 bp)
Overview 1 RT 1: 426314-429896 bp Neighborhood of RT #1 [426314, 429896] TauE RVT-GII Feature: gene Location: 426314-427201 bp Feature: domain Description: TauE Location: 426503-427178 bp Feature: domain Description: TauE Location: 426503-4271 78 bp Feature: gene Location: 427501-427671 bp Feature: gene Location: 428135-429196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428393-429092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428393-429092 bp Feature: gene Location: 429456-429650 bp Feature: gene Location: 429765-429896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629818.1 (575370 bp)
Overview 1 RT 1: 186934-191743 bp Neighborhood of RT #1 [186934, 191769] PRK00648 RadC RVT-GII Intron_maturas2 PRK00024 GDPD Feature: gene Location: 186934-187650 bp Feature: domain Description: PRK00648 Location: 187087-187636 bp Feature: domain Description: PRK00648 Location: 187087-187636 bp Feature: gene Location: 187683-188267 bp Feature: domain Description: RadC Location: 187722-188247 bp Feature: domain Description: RadC Location: 18772 2 -1882 47 bp Feature: gene Location: 188752-190242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189070-189778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189070-189778 bp Feature: domain Description: Intron_maturas2 Location: 189943-190135 bp Feature: domain Description: Intron_maturas2 Location: 189943-190135 bp Feature: gene Location: 190428-190616 bp Feature: domain Description: PRK00024 Location: 190479-190611 bp Feature: domain Description: PRK0002 4 Location: 190479-190611 bp Feature: gene Location: 190930-191769 bp Feature: domain Description: GDPD Location: 191056-191743 bp Feature: domain Description: GDPD Location: 191056-191743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629820.1 (161745 bp)
Overview 1 RT 1: 59749-64487 bp Neighborhood of RT #1 [59749, 64487] APH RVT-GII HNHc Feature: gene Location: 59749-60543 bp Feature: domain Description: APH Location: 60100-60259 bp Feature: domain Description: APH Location: 60100-60259 bp Feature: gene Location: 60845-61372 bp Feature: gene Location: 61773-63554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62031-62730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6203 1-6273 0 bp Feature: domain Description: HNHc Note: nucleases Location: 63285-63423 bp Feature: domain Description: HNHc Note: nucleases Location: 63 285-63 423 bp Feature: gene Location: 63684-63827 bp Feature: gene Location: 64329-64487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629826.1 (2799 bp)
Overview 1 RT 1: 513-2665 bp Neighborhood of RT #1 [513, 2796] Nudix_Hydrolase RVT-GII HNHc Feature: gene Location: 513-923 bp Feature: domain Description: Nudix_Hydrolase Location: 534-858 bp Feature: domain Description: Nudix_Hydrolase Location: 534 -858 bp Feature: gene Location: 1120-2796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273-1972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273-1972 bp Feature: domain Description: HNHc Note: nucleases Location: 2527-2665 bp Feature: domain Description: HNHc Note: nucleases Location: 2527-2665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629822.1 (967197 bp)
Overview 1 RT 1: 287048-293991 bp 2 RT 2: 672578-675853 bp 3 RT 3: 832529-837782 bp 4 RT 4: 961268-967135 bp Neighborhood of RT #1 [287048, 293991] PucR BCCT RVT-GII HNHc Neighborhood of RT #2 [672578, 675853] RVT-GII HNHc Neighborhood of RT #3 [832529, 837793] Caa3_CtaG NT_KNTase_like RVT-GII HNHc PRK13354 Neighborhood of RT #4 [961268, 967135] DUF3021 RVT-GII Intron_maturas2 HNHc Lysozyme_like RVT-GII HNHc Feature: gene Location: 287048-288739 bp Feature: domain Description: PucR Location: 287228-288722 bp Feature: domain Description: PucR Location: 287228-288722 bp Feature: gene Location: 289064-290671 bp Feature: domain Description: BCCT Location: 289130-290600 bp Feature: domain Description: BCCT Location: 289130-290600 bp Feature: gene Location: 291043-292824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291301-292000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291301-292000 bp Feature: domain Description: HNHc Note: nucleases Location: 292555-292693 bp Feature: domain Description: HNHc Note: nucleases Location: 2925 5 5 -292693 bp Feature: gene Location: 292954-293097 bp Feature: gene Location: 293782-293991 bp Feature: gene Location: 672578-672784 bp Feature: gene Location: 672983-673144 bp Feature: gene Location: 673308-675089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 673566-674265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6735 66-674265 bp Feature: domain Description: HNHc Note: nucleases Location: 674820-674958 bp Feature: domain Description: HNHc Note: nucleases Location: 674820-67495 8 bp Feature: gene Location: 675219-675362 bp Feature: gene Location: 675617-675853 bp Feature: gene Location: 832529-833326 bp Feature: domain Description: Caa3_CtaG Location: 832616-833288 bp Feature: domain Description: Caa3_CtaG Location: 832616-833288 bp Feature: gene Location: 833448-834071 bp Feature: domain Description: NT_KNTase_like Location: 833472-833685 bp Feature: domain Description: NT_KNTase_like Location: 833472-833685 bp Feature: gene Location: 834225-836006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834483-835182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834483-835 182 bp Feature: domain Description: HNHc Note: nucleases Location: 835737-835875 bp Feature: domain Description: HNHc Note: nucleases Location: 835 737-835 875 bp Feature: gene Location: 836204-836386 bp Feature: gene Location: 836747-837793 bp Feature: domain Description: PRK13354 Location: 836753-837782 bp Feature: domain Description: PRK1335 4 Location: 83675 3-837782 bp Feature: gene Location: 961268-961681 bp Feature: domain Description: DUF3021 Location: 961289-961667 bp Feature: domain Description: DUF3021 Location: 961289-961667 bp Feature: gene Location: 961811-961948 bp Feature: gene Location: 961945-963768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962209-963043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962209-963043 bp Feature: domain Description: Intron_maturas2 Location: 963115-963463 bp Feature: domain Description: Intron_maturas2 Location: 963115 -963463 bp Feature: domain Description: HNHc Note: nucleases Location: 963589-963742 bp Feature: domain Description: HNHc Note: nucleases Location: 9635 89-963742 bp Feature: gene Location: 964342-964548 bp Feature: domain Description: Lysozyme_like Location: 964372-964540 bp Feature: domain Description: Lysozyme_like Location: 964372-9645 40 bp Feature: gene Location: 964637-966406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964895-965606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964895 -965 606 bp Feature: domain Description: HNHc Note: nucleases Location: 966170-966305 bp Feature: domain Description: HNHc Note: nucleases Location: 966170-966305 bp Feature: gene Location: 966642-966815 bp Feature: gene Location: 966983-967135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629827.1 (20615 bp)
Overview 1 RT 1: 14777-20233 bp Neighborhood of RT #1 [14777, 20233] NlpD RVT-GII Intron_maturas2 HNHc Lysozyme_like RVT-GII HNHc Feature: gene Location: 14777-15172 bp Feature: domain Description: NlpD Location: 14807-15167 bp Feature: domain Description: NlpD Location: 14807-1516 7 bp Feature: gene Location: 15229-15366 bp Feature: gene Location: 15363-17186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15627-16461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156 27-16 46 1 bp Feature: domain Description: Intron_maturas2 Location: 16533-16881 bp Feature: domain Description: Intron_maturas2 Location: 16 533-16 881 bp Feature: domain Description: HNHc Note: nucleases Location: 17007-17160 bp Feature: domain Description: HNHc Note: nucleases Location: 17007-1716 0 bp Feature: gene Location: 17760-17972 bp Feature: domain Description: Lysozyme_like Location: 17796-17964 bp Feature: domain Description: Lysozyme_like Location: 17796 -1796 4 bp Feature: gene Location: 18055-19824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18313-19024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18313-19024 bp Feature: domain Description: HNHc Note: nucleases Location: 19588-19723 bp Feature: domain Description: HNHc Note: nucleases Location: 19588-19723 bp Feature: gene Location: 20060-20233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629811.1 (4311554 bp)
Overview 1 RT 1: 2877873-2880943 bp 2 RT 2: 3030725-3035263 bp 3 RT 3: 3608245-3612014 bp 4 RT 4: 3713171-3719390 bp 5 RT 5: 4214298-4220148 bp Neighborhood of RT #1 [2877873, 2880943] Usp SUL1 STAS_SulP_like_sulfate_transporter RVT-GII GIIM Neighborhood of RT #2 [3030725, 3035263] spore_dpaA AlsT RVT-GII GIIM Neighborhood of RT #3 [3608245, 3612014] spore_yhbH RVT-GII GIIM Neighborhood of RT #4 [3713171, 3719425] PHA_synth_III_C RVT-GII GIIM CurA CysI Neighborhood of RT #5 [4214298, 4220150] spore_V_T RVT-GII GIIM MATE_SpoVB_like YabN Feature: gene Location: 2877873-2878295 bp Feature: domain Description: Usp Location: 2877882-2878293 bp Feature: domain Description: Usp Location: 287 7 882-287 8293 bp Feature: gene Location: 2878310-2879113 bp Feature: domain Description: SUL1 Location: 2878322-2878601 bp Feature: domain Description: SUL1 Location: 287 8322-287 8601 bp Feature: domain Description: STAS_SulP_like_sulfate_transporter Location: 2878856-2879075 bp Feature: domain Description: STAS_SulP_like_sulfate_transporter Location: 287 8856-287 907 5 bp Feature: gene Location: 2879295-2880557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2879493-2880111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287 9493-2880111 bp Feature: domain Description: GIIM Note: maturase Location: 2880159-2880372 bp Feature: domain Description: GIIM Note: maturase Location: 2880159-288037 2 bp Feature: gene Location: 2880560-2880691 bp Feature: gene Location: 2880779-2880943 bp Feature: gene Location: 3030725-3031627 bp Feature: domain Description: spore_dpaA Location: 3030740-3031598 bp Feature: domain Description: spore_dpaA Location: 30307 40-3031598 bp Feature: gene Location: 3031867-3033306 bp Feature: domain Description: AlsT Location: 3031909-3033274 bp Feature: domain Description: AlsT Location: 3031909-303327 4 bp Feature: gene Location: 3033615-3034877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3033813-3034431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3033813-3034431 bp Feature: domain Description: GIIM Note: maturase Location: 3034479-3034692 bp Feature: domain Description: GIIM Note: maturase Location: 303447 9-3034692 bp Feature: gene Location: 3034880-3035011 bp Feature: gene Location: 3035099-3035263 bp Feature: gene Location: 3608245-3609408 bp Feature: domain Description: spore_yhbH Location: 3608269-3609379 bp Feature: domain Description: spore_yhbH Location: 3608269-360937 9 bp Feature: gene Location: 3609750-3610064 bp Feature: gene Location: 3610366-3611628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3610564-3611182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3610564-3611182 bp Feature: domain Description: GIIM Note: maturase Location: 3611230-3611443 bp Feature: domain Description: GIIM Note: maturase Location: 3611230-3611443 bp Feature: gene Location: 3611631-3611762 bp Feature: gene Location: 3611850-3612014 bp Feature: gene Location: 3713171-3714223 bp Feature: domain Description: PHA_synth_III_C Location: 3713234-3714170 bp Feature: domain Description: PHA_synth_III_C Location: 37 13234-37 1417 0 bp Feature: gene Location: 3714814-3714945 bp Feature: gene Location: 3714948-3716210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3715146-3715764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 15146-37 157 64 bp Feature: domain Description: GIIM Note: maturase Location: 3715812-3716025 bp Feature: domain Description: GIIM Note: maturase Location: 37 15812-37 16025 bp Feature: gene Location: 3716313-3717338 bp Feature: domain Description: CurA Location: 3716325-3717324 bp Feature: domain Description: CurA Location: 37 16325-37 17 324 bp Feature: gene Location: 3717701-3719425 bp Feature: domain Description: CysI Location: 3717755-3719390 bp Feature: domain Description: CysI Location: 37 17 7 55-37 19390 bp Feature: gene Location: 4214298-4214834 bp Feature: domain Description: spore_V_T Location: 4214304-4214829 bp Feature: domain Description: spore_V_T Location: 4214304-4214829 bp Feature: gene Location: 4215284-4215415 bp Feature: gene Location: 4215418-4216680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4215616-4216234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4215616-4216234 bp Feature: domain Description: GIIM Note: maturase Location: 4216282-4216495 bp Feature: domain Description: GIIM Note: maturase Location: 4216282-4216495 bp Feature: gene Location: 4217011-4218699 bp Feature: domain Description: MATE_SpoVB_like Location: 4217110-4218394 bp Feature: domain Description: MATE_SpoVB_like Location: 4217 110-4218394 bp Feature: gene Location: 4218696-4220150 bp Feature: domain Description: YabN Location: 4218699-4220148 bp Feature: domain Description: YabN Location: 4218699-4220148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629823.1 (196364 bp)
Overview 1 RT 1: 83443-88777 bp Neighborhood of RT #1 [83443, 88777] PRK11360 PAS_4 PRK11360 sensory_box TMAO_torS RVT-GII GIIM Feature: gene Location: 83443-86208 bp Feature: domain Description: PRK11360 Location: 83560-83920 bp Feature: domain Description: PRK11360 Location: 8 3560-8 3920 bp Feature: domain Description: PAS_4 Location: 84034-84259 bp Feature: domain Description: PAS_4 Location: 8 4034-8 4259 bp Feature: domain Description: PRK11360 Location: 84274-84676 bp Feature: domain Description: PRK11360 Location: 8 4274-8 4676 bp Feature: domain Description: sensory_box Location: 84700-85045 bp Feature: domain Description: sensory_box Location: 8 4700-8 5045 bp Feature: domain Description: TMAO_torS Location: 85054-86188 bp Feature: domain Description: TMAO_torS Location: 8 5054-8 618 8 bp Feature: gene Location: 86674-86805 bp Feature: gene Location: 86808-88070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87006-87624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 7006-8 7624 bp Feature: domain Description: GIIM Note: maturase Location: 87672-87885 bp Feature: domain Description: GIIM Note: maturase Location: 8 7672-8 78 8 5 bp Feature: gene Location: 88207-88368 bp Feature: gene Location: 88598-88777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629814.1 (51428 bp)
Overview 1 RT 1: 20090-27654 bp 2 RT 2: 41081-51290 bp Neighborhood of RT #1 [20090, 27654] RVT-GII HNHc RimL PRK08298 RVT-GII HNHc Neighborhood of RT #2 [41081, 51316] TraC-F-type Lysozyme_like RVT-GII HNHc RVT-GII HNHc Lysozyme_like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 20090-20482 bp Feature: gene Location: 20498-20680 bp Feature: gene Location: 20878-22659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21136-21835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21136-21835 bp Feature: domain Description: HNHc Note: nucleases Location: 22390-22528 bp Feature: domain Description: HNHc Note: nucleases Location: 2239 0-22528 bp Feature: gene Location: 22910-23482 bp Feature: domain Description: RimL Location: 22961-23480 bp Feature: domain Description: RimL Location: 229 61-23480 bp Feature: gene Location: 23653-24072 bp Feature: domain Description: PRK08298 Location: 23656-24055 bp Feature: domain Description: PRK0829 8 Location: 23656-24055 bp Feature: gene Location: 24484-24666 bp Feature: gene Location: 24864-26645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25122-25821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25122-25821 bp Feature: domain Description: HNHc Note: nucleases Location: 26376-26514 bp Feature: domain Description: HNHc Note: nucleases Location: 26376-26514 bp Feature: gene Location: 26753-27058 bp Feature: gene Location: 27172-27654 bp Feature: gene Location: 41081-43003 bp Feature: domain Description: TraC-F-type Location: 41789-42917 bp Feature: domain Description: TraC-F-type Location: 41789 -429 17 bp Feature: gene Location: 43006-43389 bp Feature: domain Description: Lysozyme_like Location: 43207-43354 bp Feature: domain Description: Lysozyme_like Location: 43207-43354 bp Feature: gene Location: 44069-45838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44327-45023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44327-45023 bp Feature: domain Description: HNHc Note: nucleases Location: 45587-45722 bp Feature: domain Description: HNHc Note: nucleases Location: 45587-45722 bp Feature: gene Location: 46446-46619 bp Feature: gene Location: 46855-48624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47113-47824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47113-47824 bp Feature: domain Description: HNHc Note: nucleases Location: 48388-48523 bp Feature: domain Description: HNHc Note: nucleases Location: 48388-48523 bp Feature: gene Location: 48713-48919 bp Feature: domain Description: Lysozyme_like Location: 48743-48911 bp Feature: domain Description: Lysozyme_like Location: 48743-489 11 bp Feature: gene Location: 49493-51316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49757-50591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49 757-5059 1 bp Feature: domain Description: Intron_maturas2 Location: 50663-51011 bp Feature: domain Description: Intron_maturas2 Location: 50663-51011 bp Feature: domain Description: HNHc Note: nucleases Location: 51137-51290 bp Feature: domain Description: HNHc Note: nucleases Location: 51137-5129 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: LT629815.1 (314462 bp)
Overview 1 RT 1: 308678-314324 bp Neighborhood of RT #1 [308678, 314350] CwlT_like RVT-GII HNHc Lysozyme_like RVT-GII Intron_maturas2 HNHc Feature: gene Location: 308678-309115 bp Feature: domain Description: CwlT_like Location: 308852-309098 bp Feature: domain Description: CwlT_like Location: 308852-309098 bp Feature: gene Location: 309480-309653 bp Feature: gene Location: 309889-311658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310147-310858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310 147-310 858 bp Feature: domain Description: HNHc Note: nucleases Location: 311422-311557 bp Feature: domain Description: HNHc Note: nucleases Location: 311422-311557 bp Feature: gene Location: 311747-311953 bp Feature: domain Description: Lysozyme_like Location: 311777-311945 bp Feature: domain Description: Lysozyme_like Location: 311777-311945 bp Feature: gene Location: 312527-314350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312791-313625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312791-313625 bp Feature: domain Description: Intron_maturas2 Location: 313697-314045 bp Feature: domain Description: Intron_maturas2 Location: 313697-314045 bp Feature: domain Description: HNHc Note: nucleases Location: 314171-314324 bp Feature: domain Description: HNHc Note: nucleases Location: 314171-314324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT