myRT

myRT report for GCA_900107485.1_IMG-taxon_2599185206_annotated_assembly

Download annotations/find similar RTs

Seq: FNQE01000005.1 (106706 bp)
Overview 1 RT 1: 102728-106116 bp Neighborhood of RT #1 [102728, 106283] 5S_RNA_mat_M5 YabE 3D_containing_proteins RVT-GII GIIM Feature: gene Location: 102728-103273 bp Feature: domain Description: 5S_RNA_mat_M5 Location: 102734-103241 bp Feature: domain Description: 5S_RNA_mat_M5 Location: 1 02734-1 03241 bp Feature: gene Location: 103384-104415 bp Feature: domain Description: YabE Location: 103477-104059 bp Feature: domain Description: YabE Location: 1 03477-1 04059 bp Feature: domain Description: 3D_containing_proteins Location: 104113-104407 bp Feature: domain Description: 3D_containing_proteins Location: 1 041 1 3-1 04407 bp Feature: gene Location: 104868-106283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105219-105837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0521 9-1 05837 bp Feature: domain Description: GIIM Note: maturase Location: 105894-106116 bp Feature: domain Description: GIIM Note: maturase Location: 1 05894-1 061 1 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5S_RNA_mat_M5 (TIGR00334), YabE (COG3583), 3D_containing_proteins (cd14667), RVT-GII, GIIM (pfam08388)

Seq: FNQE01000014.1 (78132 bp)
Overview 1 RT 1: 82-3054 bp Neighborhood of RT #1 [82, 3059] RVT-GII GIIM SpmA Feature: gene Location: 82-1497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433-1051 bp Feature: domain Description: GIIM Note: maturase Location: 1108-1330 bp Feature: domain Description: GIIM Note: maturase Location: 1108-1330 bp Feature: gene Location: 1983-2300 bp Feature: gene Location: 2484-3059 bp Feature: domain Description: SpmA Location: 2487-3054 bp Feature: domain Description: SpmA Location: 2 487-3054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SpmA (COG2715)

Seq: FNQE01000041.1 (22507 bp)
Overview 1 RT 1: 15677-21271 bp Neighborhood of RT #1 [15677, 21951] Csx1_III-U RVT-GII GIIM RVT-GII PRK09183 COG4584 Feature: gene Location: 15677-16060 bp Feature: gene Location: 16057-17316 bp Feature: domain Description: Csx1_III-U Location: 16066-17002 bp Feature: domain Description: Csx1_III-U Location: 16066-17002 bp Feature: gene Location: 18239-18658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18242-18449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18242-18449 bp Feature: domain Description: GIIM Note: maturase Location: 18506-18653 bp Feature: domain Description: GIIM Note: maturase Location: 18506-18653 bp Feature: gene Location: 18708-19229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19062-19227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19062-19227 bp Feature: gene Location: 19931-20674 bp Feature: domain Description: PRK09183 Location: 19946-20663 bp Feature: domain Description: PRK09183 Location: 19946-20663 bp Feature: gene Location: 20662-21951 bp Feature: domain Description: COG4584 Location: 20743-21271 bp Feature: domain Description: COG4584 Location: 20743 -21271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Csx1_III-U (cl21570), RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )

Seq: FNQE01000012.1 (89054 bp)
Overview 1 RT 1: 85387-88464 bp Neighborhood of RT #1 [85387, 88631] LytT HATPase_AgrC-ComD-like RVT-GII GIIM Feature: gene Location: 85387-85743 bp Feature: domain Description: LytT Location: 85396-85696 bp Feature: domain Description: LytT Location: 85396-85696 bp Feature: gene Location: 85768-87039 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 86644-87034 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 8664 4 -87034 bp Feature: gene Location: 87216-88631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87567-88185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87567-88185 bp Feature: domain Description: GIIM Note: maturase Location: 88242-88464 bp Feature: domain Description: GIIM Note: maturase Location: 8824 2-884 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LytT (COG3279), HATPase_AgrC-ComD-like (cd16935), RVT-GII, GIIM (pfam08388)