myRT

myRT report for GCA_900107825.1_IMG-taxon_2623620516_annotated_assembly

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Seq: FNRP01000010.1 (188892 bp)
Overview 1 RT 1: 682-3772 bp 2 RT 2: 81174-86055 bp Neighborhood of RT #1 [682, 3772] RVT_N RVT-GII GIIM Neighborhood of RT #2 [81174, 86055] COG2865 Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 682-2394 bp Feature: domain Description: RVT_N Location: 736-979 bp Feature: domain Description: RVT_N Location: 736-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1024-1672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 024-1 672 bp Feature: domain Description: GIIM Note: maturase Location: 1726-1957 bp Feature: domain Description: GIIM Note: maturase Location: 1 726-1 957 bp Feature: gene Location: 2303-3418 bp Feature: gene Location: 3521-3772 bp Feature: gene Location: 81174-82610 bp Feature: domain Description: COG2865 Location: 81177-82599 bp Feature: domain Description: COG2865 Location: 81 1 77-82599 bp Feature: gene Location: 82691-83545 bp Feature: domain Description: Toprim_2 Location: 83243-83522 bp Feature: domain Description: Toprim_2 Location: 83243-83522 bp Feature: gene Location: 83517-85325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83781-84603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83781 -84603 bp Feature: domain Description: Intron_maturas2 Location: 84672-84981 bp Feature: domain Description: Intron_maturas2 Location: 84672-84981 bp Feature: gene Location: 85614-85757 bp Feature: gene Location: 85873-86055 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FNRP01000007.1 (209037 bp)
Overview 1 RT 1: 167204-173275 bp 2 RT 2: 191657-196604 bp 3 RT 3: 202525-208488 bp Neighborhood of RT #1 [167204, 173283] DUF4141 SesA DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #2 [191657, 196604] RVT_N RVT-GII GIIM Neighborhood of RT #3 [202525, 208488] INT_RitA_C_like COG4646 RVT_N RVT-GII GIIM Feature: gene Location: 167204-167833 bp Feature: domain Description: DUF4141 Location: 167216-167372 bp Feature: domain Description: DUF4141 Location: 1672 16-167372 bp Feature: domain Description: SesA Location: 167378-167708 bp Feature: domain Description: SesA Location: 167378-167708 bp Feature: gene Location: 167857-168243 bp Feature: domain Description: DUF3876 Location: 167944-168208 bp Feature: domain Description: DUF3876 Location: 167944-1682 08 bp Feature: gene Location: 168492-170315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168756-169578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168756-169578 bp Feature: domain Description: Intron_maturas2 Location: 169752-169995 bp Feature: domain Description: Intron_maturas2 Location: 169752 -169995 bp Feature: domain Description: HNHc Note: nucleases Location: 170106-170277 bp Feature: domain Description: HNHc Note: nucleases Location: 170106-1702 77 bp Feature: gene Location: 170573-170761 bp Feature: gene Location: 170884-173283 bp Feature: domain Description: Bac_Flav_CT_G Location: 170887-173275 bp Feature: domain Description: Bac_Flav_CT_G Location: 170887-1732 75 bp Feature: gene Location: 191657-191797 bp Feature: gene Location: 192002-193315 bp Feature: gene Location: 193224-194936 bp Feature: domain Description: RVT_N Location: 193278-193521 bp Feature: domain Description: RVT_N Location: 1932 78-19352 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193566-194214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193566-1942 14 bp Feature: domain Description: GIIM Note: maturase Location: 194268-194499 bp Feature: domain Description: GIIM Note: maturase Location: 1942 68-194499 bp Feature: gene Location: 195078-195233 bp Feature: gene Location: 195606-196604 bp Feature: gene Location: 202525-203736 bp Feature: domain Description: INT_RitA_C_like Location: 203155-203692 bp Feature: domain Description: INT_RitA_C_like Location: 2 03155-2 03692 bp Feature: gene Location: 203883-204896 bp Feature: domain Description: COG4646 Location: 203889-204279 bp Feature: domain Description: COG4646 Location: 2 03889-2 042 79 bp Feature: gene Location: 205554-207266 bp Feature: domain Description: RVT_N Location: 205608-205851 bp Feature: domain Description: RVT_N Location: 2 05608-2 05851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205896-206544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 05896-2 06544 bp Feature: domain Description: GIIM Note: maturase Location: 206598-206829 bp Feature: domain Description: GIIM Note: maturase Location: 2 06598-2 0682 9 bp Feature: gene Location: 207175-208488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FNRP01000023.1 (108398 bp)
Overview 1 RT 1: 57176-69562 bp Neighborhood of RT #1 [57176, 69687] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 57176-58975 bp Feature: domain Description: rpsA Location: 57245-58844 bp Feature: domain Description: rpsA Location: 57245-58844 bp Feature: gene Location: 59072-65098 bp Feature: domain Description: DUF4011 Location: 60302-60815 bp Feature: domain Description: DUF4011 Location: 603 02-60815 bp Feature: domain Description: DEXXQc_SF1 Location: 61154-61583 bp Feature: domain Description: DEXXQc_SF1 Location: 61154-61583 bp Feature: domain Description: DEXXQc_SF1 Location: 62582-63341 bp Feature: domain Description: DEXXQc_SF1 Location: 62582-63 3 41 bp Feature: domain Description: TIGR00376 Location: 63470-63860 bp Feature: domain Description: TIGR003 76 Location: 63 470-63 860 bp Feature: domain Description: MTES_1575 Location: 64013-64298 bp Feature: domain Description: MTES_1575 Location: 64013 -64298 bp Feature: domain Description: DUF3320 Location: 64613-64748 bp Feature: domain Description: DUF3 3 20 Location: 64613 -64748 bp Feature: gene Location: 65149-66279 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65470-66013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65470-66013 bp Feature: gene Location: 66487-68694 bp Feature: gene Location: 68863-69687 bp Feature: domain Description: PDDEXK_2 Location: 68884-69562 bp Feature: domain Description: PDDEXK_2 Location: 68884-69562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT

Seq: FNRP01000016.1 (135412 bp)
Overview 1 RT 1: 41100-46462 bp 2 RT 2: 100114-101657 bp Neighborhood of RT #1 [41100, 46476] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #2 [100114, 101657] HTH_28 RVT-GII Feature: gene Location: 41100-41732 bp Feature: domain Description: DUF4141 Location: 41124-41271 bp Feature: domain Description: DUF4 14 1 Location: 4 1124 -4 1271 bp Feature: gene Location: 41753-42232 bp Feature: domain Description: Bac_Flav_CT_G Location: 41786-42218 bp Feature: domain Description: Bac_Flav_CT_G Location: 4 1786-4 2218 bp Feature: gene Location: 42289-44100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42553-43375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2553-4 3375 bp Feature: domain Description: Intron_maturas2 Location: 43450-43765 bp Feature: domain Description: Intron_maturas2 Location: 4 34 50-4 3765 bp Feature: domain Description: HNHc Note: nucleases Location: 43921-44071 bp Feature: domain Description: HNHc Note: nucleases Location: 4 3921-4 4 071 bp Feature: gene Location: 44446-44619 bp Feature: gene Location: 44647-46476 bp Feature: domain Description: Bac_Flav_CT_G Location: 44650-46462 bp Feature: domain Description: Bac_Flav_CT_G Location: 4 4 650-4 64 62 bp Feature: gene Location: 100114-100266 bp Feature: gene Location: 100444-100734 bp Feature: domain Description: HTH_28 Location: 100468-100612 bp Feature: domain Description: HTH_28 Location: 1004 68-100612 bp Feature: gene Location: 100855-101052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100858-101050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100858-101050 bp Feature: gene Location: 101082-101291 bp Feature: gene Location: 101295-101657 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT