myRT

myRT report for GCA_900108155.1_IMG-taxon_2654588179_annotated_assembly

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Seq: FNVL01000001.1 (597310 bp)
Overview 1 RT 1: 473369-485326 bp Neighborhood of RT #1 [473369, 485326] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 473369-475168 bp Feature: domain Description: rpsA Location: 473438-475052 bp Feature: domain Description: rpsA Location: 473438-475052 bp Feature: gene Location: 475337-481165 bp Feature: domain Description: DUF4011 Location: 476492-477005 bp Feature: domain Description: DUF401 1 Location: 476492-477005 bp Feature: domain Description: DEXXQc_SF1 Location: 477344-477944 bp Feature: domain Description: DEXXQc_SF1 Location: 477344-477944 bp Feature: domain Description: DEXXQc_SF1 Location: 478781-479531 bp Feature: domain Description: DEXXQc_SF1 Location: 478781 -479531 bp Feature: domain Description: SF1_C_Upf1 Location: 479540-480053 bp Feature: domain Description: SF1 _C_Upf1 Location: 479540-480053 bp Feature: domain Description: MTES_1575 Location: 480203-480491 bp Feature: domain Description: MTES_1 575 Location: 480203-480491 bp Feature: domain Description: DUF3320 Location: 480671-480815 bp Feature: domain Description: DUF3320 Location: 480671 -48081 5 bp Feature: gene Location: 481199-482332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 481523-482075 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 481 523-482075 bp Feature: gene Location: 482538-484724 bp Feature: gene Location: 485126-485326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: FNVL01000056.1 (6843 bp)
Overview 1 RT 1: 4360-6840 bp Neighborhood of RT #1 [4360, 6840] Avd_like RVT-DGRs Feature: gene Location: 4360-4731 bp Feature: domain Description: Avd_like Location: 4387-4690 bp Feature: domain Description: Avd_like Location: 4387-4690 bp Feature: gene Location: 4889-5305 bp Feature: gene Location: 5328-6566 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5409-6123 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5409-612 3 bp Feature: gene Location: 6541-6840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: FNVL01000021.1 (99348 bp)
Overview 1 RT 1: 31838-34449 bp Neighborhood of RT #1 [31838, 34449] RVT-GII GIIM RVT-GII Feature: gene Location: 31838-32044 bp Feature: gene Location: 32180-32437 bp Feature: gene Location: 32537-33055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32549-32789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2549-3 2789 bp Feature: domain Description: GIIM Note: maturase Location: 32801-33032 bp Feature: domain Description: GIIM Note: maturase Location: 3 2801-3 3 03 2 bp Feature: gene Location: 33229-33717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33565-33703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 565-3 3 703 bp Feature: gene Location: 34007-34252 bp Feature: gene Location: 34321-34449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FNVL01000002.1 (592185 bp)
Overview 1 RT 1: 376299-380248 bp Neighborhood of RT #1 [376299, 380248] RVT-DGRs Feature: gene Location: 376299-376589 bp Feature: gene Location: 376599-377960 bp Feature: gene Location: 378293-379480 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 378626-379253 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 378626-379253 bp Feature: gene Location: 379443-379871 bp Feature: gene Location: 379868-380248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: FNVL01000018.1 (134680 bp)
Overview 1 RT 1: 2629-6573 bp Neighborhood of RT #1 [2629, 6644] RVT-CRISPR-like DAO Feature: gene Location: 2629-2796 bp Feature: gene Location: 2871-3209 bp Feature: gene Location: 3452-4726 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3659-4301 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 365 9-4301 bp Feature: gene Location: 5102-5278 bp Feature: gene Location: 5340-6644 bp Feature: domain Description: DAO Location: 5511-6573 bp Feature: domain Description: DAO Location: 5 5 11-65 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, DAO (pfam01266)

Seq: FNVL01000068.1 (2682 bp)
Overview 1 RT 1: 3-2674 bp Neighborhood of RT #1 [3, 2679] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 3-209 bp Feature: domain Description: Bac_Flav_CT_G Location: 114-210 bp Feature: domain Description: Bac_Flav_CT_G Location: 114-210 bp Feature: gene Location: 212-1915 bp Feature: domain Description: RVT_N Location: 311-554 bp Feature: domain Description: RVT_N Location: 311-554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599-1250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599-1250 bp Feature: domain Description: GIIM Note: maturase Location: 1301-1535 bp Feature: domain Description: GIIM Note: maturase Location: 1301-1535 bp Feature: gene Location: 2095-2301 bp Feature: gene Location: 2494-2679 bp Feature: domain Description: Bac_Flav_CT_G Location: 2497-2674 bp Feature: domain Description: Bac_Flav_CT_G Location: 2497-26 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)