myRT

myRT report for GCA_900108345.1_PRJEB16738

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Seq: FNVV01000014.1 (2334547 bp)
Overview 1 RT 1: 893777-900420 bp 2 RT 2: 1469912-1474622 bp 3 RT 3: 2225222-2229243 bp 4 RT 4: 2278763-2281971 bp Neighborhood of RT #1 [893777, 900425] AcrB RVT-GII Intron_maturas2 HNHc AcrB RND_mfp Neighborhood of RT #2 [1469912, 1474622] RVT-GII Intron_maturas2 DUF1738 MPTase-PolyVal Neighborhood of RT #3 [2225222, 2229485] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 ORF6N Neighborhood of RT #4 [2278763, 2281971] RVT-UG27 Feature: gene Location: 893777-896260 bp Feature: domain Description: AcrB Location: 893801-896210 bp Feature: domain Description: AcrB Location: 893801 -89621 0 bp Feature: gene Location: 896508-896837 bp Feature: gene Location: 896839-898644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 897103-897925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8971 03-897925 bp Feature: domain Description: Intron_maturas2 Location: 898003-898339 bp Feature: domain Description: Intron_maturas2 Location: 898003-898339 bp Feature: domain Description: HNHc Note: nucleases Location: 898477-898621 bp Feature: domain Description: HNHc Note: nucleases Location: 898477-898621 bp Feature: gene Location: 898657-899370 bp Feature: domain Description: AcrB Location: 898684-899263 bp Feature: domain Description: AcrB Location: 898684-899263 bp Feature: gene Location: 899400-900425 bp Feature: domain Description: RND_mfp Location: 899505-900420 bp Feature: domain Description: RND_mfp Location: 899505-900420 bp Feature: gene Location: 1469912-1470145 bp Feature: gene Location: 1470150-1470404 bp Feature: gene Location: 1470418-1472223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1470682-1471504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 470682-1 471 504 bp Feature: domain Description: Intron_maturas2 Location: 1471681-1471903 bp Feature: domain Description: Intron_maturas2 Location: 1 471 681 -1 471 903 bp Feature: gene Location: 1472216-1473829 bp Feature: domain Description: DUF1738 Location: 1472342-1472618 bp Feature: domain Description: DUF1 738 Location: 1 472342-1 47261 8 bp Feature: domain Description: MPTase-PolyVal Location: 1472777-1473095 bp Feature: domain Description: MPTase-PolyVal Location: 1 472777-1 473095 bp Feature: gene Location: 1473882-1474622 bp Feature: gene Location: 2225222-2225521 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2225249-2225471 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2225249-2225471 bp Feature: gene Location: 2225548-2226384 bp Feature: domain Description: Phage_int_SAM_5 Location: 2225557-2225860 bp Feature: domain Description: Phage_int_SAM_5 Location: 2225557-2225860 bp Feature: domain Description: INTN1_C_like Location: 2225902-2226367 bp Feature: domain Description: INTN1 _C_like Location: 2225902-2226367 bp Feature: gene Location: 2226931-2228739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2227195-2228017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22271 95-222801 7 bp Feature: domain Description: Intron_maturas2 Location: 2228128-2228398 bp Feature: domain Description: Intron_maturas2 Location: 22281 28-2228398 bp Feature: gene Location: 2228741-2228929 bp Feature: gene Location: 2228952-2229485 bp Feature: domain Description: ORF6N Location: 2228976-2229243 bp Feature: domain Description: ORF6N Location: 2228976-2229243 bp Feature: gene Location: 2278763-2279041 bp Feature: gene Location: 2279071-2279337 bp Feature: gene Location: 2279387-2280649 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2279579-2280215 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2279579-228021 5 bp Feature: gene Location: 2280642-2281310 bp Feature: gene Location: 2281324-2281971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrB (COG0841), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RND_mfp (TIGR01730), DUF1738 (pfam08401), MPTase-PolyVal (pfam18818), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)
ORF6N (pfam10543), RVT-UG27

Seq: FNVV01000013.1 (1559465 bp)
Overview 1 RT 1: 725518-729865 bp 2 RT 2: 810450-815764 bp 3 RT 3: 1384508-1390049 bp Neighborhood of RT #1 [725518, 729865] RVT-GII Intron_maturas2 DUF1738 MPTase-PolyVal Neighborhood of RT #2 [810450, 815808] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Neighborhood of RT #3 [1384508, 1390054] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 725518-725751 bp Feature: gene Location: 725756-726010 bp Feature: gene Location: 726024-727829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 726288-727110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 62 88-72 7110 bp Feature: domain Description: Intron_maturas2 Location: 727287-727509 bp Feature: domain Description: Intron_maturas2 Location: 72 72 87-72 7509 bp Feature: gene Location: 727822-729438 bp Feature: domain Description: DUF1738 Location: 727948-728224 bp Feature: domain Description: DUF1738 Location: 72 7948-72 82 2 4 bp Feature: domain Description: MPTase-PolyVal Location: 728386-728698 bp Feature: domain Description: MPTase-PolyVal Location: 72 8386-72 8698 bp Feature: gene Location: 729497-729865 bp Feature: gene Location: 810450-812486 bp Feature: domain Description: Bac_Flav_CT_G Location: 810453-812481 bp Feature: domain Description: Bac_Flav_CT_G Location: 810453-812 481 bp Feature: gene Location: 812679-813026 bp Feature: gene Location: 813064-814764 bp Feature: domain Description: RVT_N Location: 813163-813406 bp Feature: domain Description: RVT_N Location: 813163-813406 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813451-814099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813451-814099 bp Feature: domain Description: GIIM Note: maturase Location: 814150-814384 bp Feature: domain Description: GIIM Note: maturase Location: 814150-814384 bp Feature: gene Location: 814767-815360 bp Feature: domain Description: Bac_Flav_CT_G Location: 814884-815340 bp Feature: domain Description: Bac_Flav_CT_G Location: 814884-815340 bp Feature: gene Location: 815398-815808 bp Feature: domain Description: DUF3876 Location: 815503-815764 bp Feature: domain Description: DUF3876 Location: 815503-815764 bp Feature: gene Location: 1384508-1385122 bp Feature: gene Location: 1385156-1385743 bp Feature: domain Description: Bac_Flav_CT_G Location: 1385273-1385732 bp Feature: domain Description: Bac_Flav_CT_G Location: 13852 73-1385732 bp Feature: gene Location: 1385746-1387446 bp Feature: domain Description: RVT_N Location: 1385845-1386088 bp Feature: domain Description: RVT_N Location: 1385845-1386088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386133-1386781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1386133-1386781 bp Feature: domain Description: GIIM Note: maturase Location: 1386832-1387066 bp Feature: domain Description: GIIM Note: maturase Location: 1386832 -1387066 bp Feature: gene Location: 1387484-1387831 bp Feature: gene Location: 1388024-1390054 bp Feature: domain Description: Bac_Flav_CT_G Location: 1388027-1390049 bp Feature: domain Description: Bac_Flav_CT_G Location: 138802 7-1390049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401), MPTase-PolyVal (pfam18818), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)