myRT

myRT report for GCA_900108895.1_IMG-taxon_2654588144_annotated_assembly

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Seq: FOJH01000049.1 (39496 bp)
Overview 1 RT 1: 37908-39353 bp Neighborhood of RT #1 [37908, 39355] RVT-GII Feature: gene Location: 37908-38120 bp Feature: gene Location: 38269-39078 bp Feature: gene Location: 39029-39355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39254-39353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39254-39353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: FOJH01000065.1 (25016 bp)
Overview 1 RT 1: 1533-5541 bp Neighborhood of RT #1 [1533, 5576] DUF4368 RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 1533-1709 bp Feature: domain Description: DUF4368 Location: 1542-1707 bp Feature: domain Description: DUF4368 Location: 1542 -1707 bp Feature: gene Location: 1737-2486 bp Feature: gene Location: 2867-4669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3137-3950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3137-3950 bp Feature: domain Description: Intron_maturas2 Location: 4106-4325 bp Feature: domain Description: Intron_maturas2 Location: 4106-432 5 bp Feature: domain Description: HNHc Note: nucleases Location: 4499-4649 bp Feature: domain Description: HNHc Note: nucleases Location: 4499-4649 bp Feature: gene Location: 4790-5059 bp Feature: gene Location: 5214-5576 bp Feature: domain Description: Relaxase Location: 5250-5541 bp Feature: domain Description: Relaxase Location: 52 50-5541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4368 (pfam14287), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432)

Seq: FOJH01000093.1 (13076 bp)
Overview 1 RT 1: 2111-6236 bp Neighborhood of RT #1 [2111, 6236] HTH_32 DDE_3 RVT-UG2 Feature: gene Location: 2111-2563 bp Feature: domain Description: HTH_32 Location: 2297-2522 bp Feature: domain Description: HTH_3 2 Location: 2297-2522 bp Feature: gene Location: 2608-3225 bp Feature: domain Description: DDE_3 Location: 2662-3103 bp Feature: domain Description: DDE_3 Location: 2662-3 103 bp Feature: gene Location: 3229-4182 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3496-4162 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3 496-4162 bp Feature: gene Location: 4558-5823 bp Feature: gene Location: 5886-6236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), DDE_3 (pfam13358), RVT-UG2

Seq: FOJH01000097.1 (11097 bp)
Overview 1 RT 1: 8592-11089 bp Neighborhood of RT #1 [8592, 11094] HTH_21 PHA02517 RVT-GII GIIM recomb_XerD Feature: gene Location: 8592-8984 bp Feature: domain Description: HTH_21 Location: 8718-8877 bp Feature: domain Description: HTH_21 Location: 8718-8877 bp Feature: gene Location: 9042-9377 bp Feature: domain Description: PHA02517 Location: 9057-9375 bp Feature: domain Description: PHA02517 Location: 9057-9375 bp Feature: gene Location: 9545-10204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9548-9755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954 8-9755 bp Feature: domain Description: GIIM Note: maturase Location: 9809-10028 bp Feature: domain Description: GIIM Note: maturase Location: 9809-10028 bp Feature: gene Location: 10375-11094 bp Feature: domain Description: recomb_XerD Location: 10747-11089 bp Feature: domain Description: recomb_XerD Location: 1074 7-11089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), recomb_XerD (TIGR02225)

Seq: FOJH01000090.1 (14939 bp)
Overview 1 RT 1: 2052-4303 bp Neighborhood of RT #1 [2052, 4303] YhcG_C YhcG RVT-GII Feature: gene Location: 2052-2435 bp Feature: domain Description: YhcG_C Location: 2055-2376 bp Feature: domain Description: YhcG_C Location: 205 5 -2376 bp Feature: gene Location: 2408-2836 bp Feature: domain Description: YhcG Location: 2468-2804 bp Feature: domain Description: YhcG Location: 2468-2804 bp Feature: gene Location: 3541-3786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3547-3784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 47-3784 bp Feature: gene Location: 3807-4007 bp Feature: gene Location: 4112-4303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG_C, YhcG (COG4804), RVT-GII