myRT

myRT report for GCA_900109635.1_IMG-taxon_2623620522_annotated_assembly

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Seq: FOBA01000011.1 (126523 bp)
Overview 1 RT 1: 110317-114199 bp Neighborhood of RT #1 [110317, 114219] Avd_like RVT-DGRs YbdN Feature: gene Location: 110317-110688 bp Feature: domain Description: Avd_like Location: 110344-110647 bp Feature: domain Description: Avd_like Location: 1 1 0344-1 1 0647 bp Feature: gene Location: 110821-111033 bp Feature: gene Location: 111158-112468 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 111365-112079 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 1 365-1 1 2079 bp Feature: gene Location: 112492-112938 bp Feature: gene Location: 112960-114219 bp Feature: domain Description: YbdN Location: 112966-114199 bp Feature: domain Description: YbdN Location: 1 1 2966-1 1 41 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969)

Seq: FOBA01000046.1 (28552 bp)
Overview 1 RT 1: 2-8759 bp Neighborhood of RT #1 [2, 8773] HTH_23 Bac_Flav_CT_G RVT_N RVT-GII GIIM MPP_MS158 DUF4134 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 2-232 bp Feature: domain Description: HTH_23 Location: 5-167 bp Feature: domain Description: HTH_2 3 Location: 5-167 bp Feature: gene Location: 397-840 bp Feature: domain Description: Bac_Flav_CT_G Location: 469-781 bp Feature: domain Description: Bac_Flav_CT_G Location: 469-781 bp Feature: gene Location: 1411-3057 bp Feature: domain Description: RVT_N Location: 1465-1708 bp Feature: domain Description: RVT_N Location: 1465-1708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753-2398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753-2 398 bp Feature: domain Description: GIIM Note: maturase Location: 2452-2683 bp Feature: domain Description: GIIM Note: maturase Location: 2 452 -2 683 bp Feature: gene Location: 3291-4052 bp Feature: domain Description: MPP_MS158 Location: 3300-3999 bp Feature: domain Description: MPP_MS158 Location: 3300-3999 bp Feature: gene Location: 4049-4834 bp Feature: gene Location: 6206-6679 bp Feature: gene Location: 6660-6926 bp Feature: domain Description: DUF4134 Location: 6711-6909 bp Feature: domain Description: DUF4134 Location: 6711-6909 bp Feature: gene Location: 6968-7891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6977-7169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6977-7169 bp Feature: domain Description: Intron_maturas2 Location: 7238-7550 bp Feature: domain Description: Intron_maturas2 Location: 72 38-7550 bp Feature: gene Location: 7863-8234 bp Feature: gene Location: 8363-8773 bp Feature: domain Description: Toprim_2 Location: 8474-8759 bp Feature: domain Description: Toprim_2 Location: 8474-8759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MPP_MS158 (cd07404), DUF4134 (pfam13572), Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: FOBA01000087.1 (5364 bp)
Overview 1 RT 1: 655-5305 bp Neighborhood of RT #1 [655, 5361] Hypoth_Ymh RVT-AbiP2 COG1373 IstB_IS21 Feature: gene Location: 655-921 bp Feature: gene Location: 994-1788 bp Feature: domain Description: Hypoth_Ymh Location: 1411-1765 bp Feature: domain Description: Hypoth_Ymh Location: 1411-1765 bp Feature: gene Location: 1813-3336 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2242-2698 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2242-2698 bp Feature: gene Location: 3395-4654 bp Feature: domain Description: COG1373 Location: 3401-4634 bp Feature: domain Description: COG13 73 Location: 3 401-463 4 bp Feature: gene Location: 5137-5361 bp Feature: domain Description: IstB_IS21 Location: 5143-5305 bp Feature: domain Description: IstB_IS21 Location: 5143 -53 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), RVT-AbiP2, COG1373 (Predicted ATPase, AAA+ superfamily ), IstB_IS21 (pfam01695)