myRT

myRT report for GCA_900110375.1_IMG-taxon_2619618873_annotated_assembly

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Seq: FODN01000011.1 (40713 bp)
Overview 1 RT 1: 3-3621 bp Neighborhood of RT #1 [3, 3689] RVT-GII sensory_box sensory_box sensory_box sensory_box sensory_box Feature: gene Location: 3-284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198-282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 98-282 bp Feature: gene Location: 926-1081 bp Feature: gene Location: 1536-3689 bp Feature: domain Description: sensory_box Location: 1788-2142 bp Feature: domain Description: sensory_box Location: 1 788-21 42 bp Feature: domain Description: sensory_box Location: 2184-2499 bp Feature: domain Description: sensory_box Location: 21 84-2499 bp Feature: domain Description: sensory_box Location: 2538-2847 bp Feature: domain Description: sensory_box Location: 2538-2847 bp Feature: domain Description: sensory_box Location: 2889-3198 bp Feature: domain Description: sensory_box Location: 2889-31 98 bp Feature: domain Description: sensory_box Location: 3234-3621 bp Feature: domain Description: sensory_box Location: 3234-3621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, sensory_box (TIGR00229)

Seq: FODN01000001.1 (974795 bp)
Overview 1 RT 1: 1-2072 bp Neighborhood of RT #1 [1, 2113] RVT-GII TMR_SDR_a Feature: gene Location: 1-540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196-538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196-538 bp Feature: gene Location: 575-847 bp Feature: gene Location: 1244-2113 bp Feature: domain Description: TMR_SDR_a Location: 1259-2072 bp Feature: domain Description: TMR_SDR_a Location: 12 59-2 072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TMR_SDR_a (cd05269)

Seq: FODN01000006.1 (235027 bp)
Overview 1 RT 1: 1-3634 bp 2 RT 2: 152575-158159 bp Neighborhood of RT #1 [1, 3634] GIIM DUF3862 RVT-AbiP2 Neighborhood of RT #2 [152575, 158206] DnaJ DnaJ YceI RVT-Retrons PRK11263 S2P-M50_SpoIVFB_CBS CBS_pair_peptidase_M50 Feature: gene Location: 1-372 bp Feature: domain Description: GIIM Note: maturase Location: 4-166 bp Feature: domain Description: GIIM Note: maturase Location: 4-166 bp Feature: gene Location: 427-795 bp Feature: domain Description: DUF3862 Location: 511-658 bp Feature: domain Description: DUF3 862 Location: 511-658 bp Feature: gene Location: 956-2542 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1418-1874 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1418-1874 bp Feature: gene Location: 2720-3376 bp Feature: gene Location: 3425-3634 bp Feature: gene Location: 152575-153480 bp Feature: domain Description: DnaJ Location: 152587-153055 bp Feature: domain Description: DnaJ Location: 152587-153 055 bp Feature: domain Description: DnaJ Location: 153055-153472 bp Feature: domain Description: DnaJ Location: 153 055-153 472 bp Feature: gene Location: 153556-154128 bp Feature: domain Description: YceI Location: 153610-154126 bp Feature: domain Description: YceI Location: 153 610-154126 bp Feature: gene Location: 154378-155439 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 154606-155155 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 154606-155155 bp Feature: gene Location: 155923-157077 bp Feature: domain Description: PRK11263 Location: 155956-157057 bp Feature: domain Description: PRK11263 Location: 155956-157057 bp Feature: gene Location: 157064-158206 bp Feature: domain Description: S2P-M50_SpoIVFB_CBS Location: 157127-157778 bp Feature: domain Description: S2P-M50_SpoIVFB_CBS Location: 157127-157778 bp Feature: domain Description: CBS_pair_peptidase_M50 Location: 157823-158159 bp Feature: domain Description: CBS_pair_peptidase_M50 Location: 157823 -158159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), DUF3862 (pfam12978), RVT-AbiP2, DnaJ (smart00271), YceI (smart00867), RVT-Retrons, PRK11263 (cardiolipin synthase ClsB), S2P-M50_SpoIVFB_CBS (cd06164), CBS_pair_peptidase_M50 (cd04801)