myRT

myRT report for GCA_900111165.1_IMG-taxon_2675903037_annotated_assembly

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Seq: FOGH01000111.1 (2279 bp)
Overview 1 RT 1: 91-2276 bp Neighborhood of RT #1 [91, 2276] RVT-GII GIIM Feature: gene Location: 91-1617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364-1096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364-1 096 bp Feature: domain Description: GIIM Note: maturase Location: 1189-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 89-1 396 bp Feature: gene Location: 1788-1949 bp Feature: gene Location: 2031-2276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FOGH01000095.1 (3460 bp)
Overview 1 RT 1: 51-1089 bp Neighborhood of RT #1 [51, 1089] RVT-Retrons HTH_XRE Feature: gene Location: 51-605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 237-558 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 37-558 bp Feature: gene Location: 580-891 bp Feature: domain Description: HTH_XRE Location: 592-754 bp Feature: domain Description: HTH_XRE Location: 592 -754 bp Feature: gene Location: 946-1089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: FOGH01000054.1 (15734 bp)
Overview 1 RT 1: 193-967 bp 2 RT 2: 13730-15375 bp Neighborhood of RT #1 [193, 967] RVT-GII Neighborhood of RT #2 [13730, 15611] sspA PRK11798 RVT-Retrons Feature: gene Location: 193-321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217-316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217-3 16 bp Feature: gene Location: 494-649 bp Feature: gene Location: 656-967 bp Feature: gene Location: 13730-14332 bp Feature: domain Description: sspA Location: 13733-14327 bp Feature: domain Description: sspA Location: 13 73 3 -143 27 bp Feature: gene Location: 14329-14763 bp Feature: domain Description: PRK11798 Location: 14335-14761 bp Feature: domain Description: PRK11798 Location: 143 3 5-14761 bp Feature: gene Location: 15195-15611 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15201-15375 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15201-153 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, sspA (PRK09481), PRK11798 (ClpXP protease specificity-enhancing factor; Provisional), RVT-Retrons

Seq: FOGH01000001.1 (215840 bp)
Overview 1 RT 1: 166926-172440 bp Neighborhood of RT #1 [166926, 172451] YfmG Hrd RVT-DGRs YfmG YfmG Feature: gene Location: 166926-169811 bp Feature: domain Description: YfmG Location: 169011-169680 bp Feature: domain Description: YfmG Location: 169011-169680 bp Feature: gene Location: 169808-170302 bp Feature: domain Description: Hrd Location: 170057-170258 bp Feature: domain Description: Hrd Location: 170057-170258 bp Feature: gene Location: 170277-171284 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 170484-171075 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1704 84 -171075 bp Feature: gene Location: 171287-171628 bp Feature: domain Description: YfmG Location: 171308-171431 bp Feature: domain Description: YfmG Location: 171308-1714 31 bp Feature: gene Location: 171600-172451 bp Feature: domain Description: YfmG Location: 171759-172440 bp Feature: domain Description: YfmG Location: 171759-1724 4 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), Hrd (LOAD_Hrd), RVT-DGRs

Seq: FOGH01000003.1 (170086 bp)
Overview 1 RT 1: 99132-103123 bp Neighborhood of RT #1 [99132, 103123] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III RVT-CRISPR Cas2_I_II_III Feature: gene Location: 99132-99413 bp Feature: gene Location: 99625-99816 bp Feature: domain Description: Cas2_I_II_III Location: 99628-99763 bp Feature: domain Description: Cas2_I_II_III Location: 99628-99763 bp Feature: gene Location: 99909-101495 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 99981-100212 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 99981-100212 bp Feature: domain Description: Cas1_I-II-III Location: 100500-101454 bp Feature: domain Description: Cas1_I-II-III Location: 1005 00-10145 4 bp Feature: gene Location: 101279-102016 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 101501-101873 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1015 01-101873 bp Feature: gene Location: 102018-102296 bp Feature: domain Description: Cas2_I_II_III Location: 102027-102222 bp Feature: domain Description: Cas2_I_II_III Location: 102027-102222 bp Feature: gene Location: 102920-103123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)