myRT

myRT report for GCA_900111295.1_IMG-taxon_2675903018_annotated_assembly

Download annotations/find similar RTs

Seq: FOGT01000008.1 (202057 bp)
Overview 1 RT 1: 40268-47069 bp Neighborhood of RT #1 [40268, 47077] Cupin_2 GrpB RVT-UG16 DUF948 BglG PtsN Feature: gene Location: 40268-40657 bp Feature: domain Description: Cupin_2 Location: 40409-40586 bp Feature: domain Description: Cupin_2 Location: 40409-40586 bp Feature: gene Location: 40744-41268 bp Feature: domain Description: GrpB Location: 40771-41260 bp Feature: domain Description: GrpB Location: 40771 -41 260 bp Feature: gene Location: 41719-43482 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 42172-42574 bp Feature: RT Description: RVT-UG1 6 Note: UG1 6 RT Location: 421 72-42574 bp Feature: gene Location: 43986-44375 bp Feature: domain Description: DUF948 Location: 44004-44256 bp Feature: domain Description: DUF948 Location: 44004-44256 bp Feature: gene Location: 45152-47077 bp Feature: domain Description: BglG Location: 45155-46643 bp Feature: domain Description: BglG Location: 451 55-46643 bp Feature: domain Description: PtsN Location: 46658-47069 bp Feature: domain Description: PtsN Location: 46658-47069 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_2 (pfam07883), GrpB (pfam04229), RVT-UG16, DUF948 (pfam06103), BglG (COG3711), PtsN (COG1762)

Seq: FOGT01000036.1 (1904 bp)
Overview 1 RT 1: 173-1641 bp Neighborhood of RT #1 [173, 1832] RVT-GII GIIM Feature: gene Location: 173-337 bp Feature: gene Location: 426-1832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1365 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1641 bp Feature: domain Description: GIIM Note: maturase Location: 142 8-1641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: FOGT01000014.1 (119954 bp)
Overview 1 RT 1: 149-3523 bp Neighborhood of RT #1 [149, 3741] RVT-UG2 yflN-like_MBL-fold Feature: gene Location: 149-655 bp Feature: gene Location: 1017-1172 bp Feature: gene Location: 1257-2594 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1482-2301 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1482-23 01 bp Feature: gene Location: 2597-2782 bp Feature: gene Location: 2866-3741 bp Feature: domain Description: yflN-like_MBL-fold Location: 3013-3523 bp Feature: domain Description: yflN-like_MBL-fold Location: 3 013 -3 523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, yflN-like_MBL-fold (cd07721)

Seq: FOGT01000007.1 (238651 bp)
Overview 1 RT 1: 16574-19701 bp Neighborhood of RT #1 [16574, 19838] COG2345 RVT-GII HipB HTH_Bact Feature: gene Location: 16574-17872 bp Feature: domain Description: COG2345 Location: 17705-17864 bp Feature: domain Description: COG234 5 Location: 17705-17864 bp Feature: gene Location: 17999-18196 bp Feature: gene Location: 18311-18529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18317-18509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18317-18509 bp Feature: gene Location: 18647-18889 bp Feature: gene Location: 18954-19838 bp Feature: domain Description: HipB Location: 18969-19203 bp Feature: domain Description: HipB Location: 18969-19203 bp Feature: domain Description: HTH_Bact Location: 19599-19701 bp Feature: domain Description: HTH_Bact Location: 19599-19701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2345 (Predicted transcriptional regulator, ArsR family ), RVT-GII, HipB (COG1396), HTH_Bact (pfam18768)

Seq: FOGT01000002.1 (370881 bp)
Overview 1 RT 1: 6877-9081 bp Neighborhood of RT #1 [6877, 9081] RVT-GII Feature: gene Location: 6877-7050 bp Feature: gene Location: 7342-7581 bp Feature: gene Location: 7663-7968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7666-7834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7666-7834 bp Feature: gene Location: 8258-8542 bp Feature: gene Location: 8899-9081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII