myRT

myRT report for GCA_900112365.1_IMG-taxon_2622736583_annotated_assembly

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Seq: FOLQ01000021.1 Spirosoma endophyticum strain DSM 26130 genome assembly, contig: Ga0070228_121, whole genome shotgun sequence (96848 bp)
Overview 1 RT 1: 18124-22085 bp Neighborhood of RT #1 [18124, 22117] UPRTase RVT-Retrons PinE Feature: gene Location: 18124-18996 bp Feature: domain Description: UPRTase Location: 18514-18769 bp Feature: domain Description: UPRTase Location: 1 851 4-1 8769 bp Feature: gene Location: 19016-19339 bp Feature: gene Location: 19608-20624 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 19833-20385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9833-20385 bp Feature: gene Location: 21112-21375 bp Feature: gene Location: 21458-22117 bp Feature: domain Description: PinE Location: 21461-22085 bp Feature: domain Description: PinE Location: 21 461 -22085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPRTase (pfam14681), RVT-Retrons, PinE (COG1961)

Seq: FOLQ01000009.1 Spirosoma endophyticum strain DSM 26130 genome assembly, contig: Ga0070228_109, whole genome shotgun sequence (245285 bp)
Overview 1 RT 1: 220854-227168 bp Neighborhood of RT #1 [220854, 227443] PRK09236 VirE_N RVT-UG28b DGQHR_domain Feature: gene Location: 220854-222191 bp Feature: domain Description: PRK09236 Location: 220857-222189 bp Feature: domain Description: PRK092 36 Location: 2 2 0857-2 2 2 189 bp Feature: gene Location: 222493-223476 bp Feature: domain Description: VirE_N Location: 222673-223027 bp Feature: domain Description: VirE_N Location: 2 2 2 673-2 2 302 7 bp Feature: gene Location: 223619-225469 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 224117-224828 bp Feature: RT Description: RVT-UG2 8b Note: UG2 8b RT Location: 2 2 4117-2 2 482 8 bp Feature: gene Location: 225495-226457 bp Feature: gene Location: 226457-227443 bp Feature: domain Description: DGQHR_domain Location: 226544-227168 bp Feature: domain Description: DGQHR_domain Location: 2 2 6544-2 2 7168 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09236 (dihydroorotase; Reviewed), VirE_N (pfam08800), RVT-UG28b, DGQHR_domain (cd16413)

Seq: FOLQ01000027.1 Spirosoma endophyticum strain DSM 26130 genome assembly, contig: Ga0070228_127, whole genome shotgun sequence (57468 bp)
Overview 1 RT 1: 11524-16647 bp Neighborhood of RT #1 [11524, 16778] DEDD_Tnp_IS110 RVT_N RVT-GII GIIM HNHc DEDD_Tnp_IS110 Transposase_20 DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 11524-11790 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 11575-11704 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 11575-11704 bp Feature: gene Location: 12026-12211 bp Feature: gene Location: 12291-14060 bp Feature: domain Description: RVT_N Location: 12387-12633 bp Feature: domain Description: RVT_N Location: 123 87-1263 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12681-13329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12681-13 3 29 bp Feature: domain Description: GIIM Note: maturase Location: 13401-13635 bp Feature: domain Description: GIIM Note: maturase Location: 13 401-13 63 5 bp Feature: domain Description: HNHc Note: nucleases Location: 13839-13998 bp Feature: domain Description: HNHc Note: nucleases Location: 13 83 9-13 998 bp Feature: gene Location: 14071-14943 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 14134-14401 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1413 4-14401 bp Feature: domain Description: Transposase_20 Location: 14557-14812 bp Feature: domain Description: Transposase_20 Location: 14557-14812 bp Feature: gene Location: 15942-16778 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 15957-16209 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 15957-16209 bp Feature: domain Description: Transposase_20 Location: 16395-16647 bp Feature: domain Description: Transposase_20 Location: 163 95-16647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Transposase_20 (pfam02371)

Seq: FOLQ01000035.1 Spirosoma endophyticum strain DSM 26130 genome assembly, contig: Ga0070228_135, whole genome shotgun sequence (38193 bp)
Overview 1 RT 1: 1-4458 bp Neighborhood of RT #1 [1, 4458] RVT-GII Intron_maturas2 Feature: gene Location: 1-300 bp Feature: gene Location: 470-1399 bp Feature: gene Location: 1517-3373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1778-2573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1778-2573 bp Feature: domain Description: Intron_maturas2 Location: 2681-2909 bp Feature: domain Description: Intron_maturas2 Location: 2681-2909 bp Feature: gene Location: 3755-3910 bp Feature: gene Location: 4138-4458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)