myRT

myRT report for GCA_900113335.1_IMG-taxon_2599185230_annotated_assembly

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Seq: FOOX01000032.1 (16786 bp)
Overview 1 RT 1: 283-2989 bp Neighborhood of RT #1 [283, 3087] RVT-GII GIIM DDE_Tnp_1_2 Feature: gene Location: 283-2031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610-1282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 0-1 282 bp Feature: domain Description: GIIM Note: maturase Location: 1399-1573 bp Feature: domain Description: GIIM Note: maturase Location: 1 399-1 573 bp Feature: gene Location: 2162-2401 bp Feature: gene Location: 2419-3087 bp Feature: domain Description: DDE_Tnp_1_2 Location: 2713-2989 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 271 3-2989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_1_2 (pfam13586)

Seq: FOOX01000023.1 (86942 bp)
Overview 1 RT 1: 11591-13576 bp Neighborhood of RT #1 [11591, 13599] KOG4768 RVT-GII KOG4768 Feature: gene Location: 11591-11824 bp Feature: gene Location: 11835-12065 bp Feature: gene Location: 12236-12727 bp Feature: domain Description: KOG4768 Location: 12347-12437 bp Feature: domain Description: KOG4768 Location: 12 347-12 437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12449-12587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 449-12 587 bp Feature: gene Location: 12806-12943 bp Feature: gene Location: 12976-13599 bp Feature: domain Description: KOG4768 Location: 12991-13576 bp Feature: domain Description: KOG4768 Location: 12 991-13576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT-GII

Seq: FOOX01000025.1 (60384 bp)
Overview 1 RT 1: 2059-6303 bp Neighborhood of RT #1 [2059, 6303] ArdC RVT-GII DUF1738 Feature: gene Location: 2059-2376 bp Feature: gene Location: 2447-3217 bp Feature: domain Description: ArdC Location: 2555-3200 bp Feature: domain Description: ArdC Location: 2555-3 200 bp Feature: gene Location: 3239-5149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3608-4316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 608-43 16 bp Feature: gene Location: 5800-5994 bp Feature: domain Description: DUF1738 Location: 5812-5947 bp Feature: domain Description: DUF173 8 Location: 5812-5947 bp Feature: gene Location: 6109-6303 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, DUF1738 (pfam08401)

Seq: FOOX01000002.1 (494664 bp)
Overview 1 RT 1: 113985-119589 bp 2 RT 2: 222476-225003 bp Neighborhood of RT #1 [113985, 119630] PRK12804 RVT-GII group_II_RT_mat DNA_alkylation Neighborhood of RT #2 [222476, 225003] CcmA AcrR RVT-CRISPR-like Feature: gene Location: 113985-116507 bp Feature: domain Description: PRK12804 Location: 113988-114450 bp Feature: domain Description: PRK12804 Location: 113988-114 4 50 bp Feature: gene Location: 116536-116691 bp Feature: gene Location: 117174-117980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117462-117978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174 62-117978 bp Feature: gene Location: 118041-118517 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 118047-118416 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 11804 7-1184 16 bp Feature: gene Location: 118917-119630 bp Feature: domain Description: DNA_alkylation Location: 118941-119589 bp Feature: domain Description: DNA_alkylation Location: 11894 1-119589 bp Feature: gene Location: 222476-223378 bp Feature: domain Description: CcmA Location: 222479-223346 bp Feature: domain Description: CcmA Location: 2224 79-22334 6 bp Feature: gene Location: 223391-224032 bp Feature: domain Description: AcrR Location: 223454-223799 bp Feature: domain Description: AcrR Location: 2234 54 -223799 bp Feature: gene Location: 224213-224353 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 224249-224339 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 224 24 9-224 339 bp Feature: gene Location: 224350-224553 bp Feature: gene Location: 224788-225003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12804 (flagellin; Provisional), RVT-GII, group_II_RT_mat (TIGR04416), DNA_alkylation (pfam08713), CcmA (COG4133), AcrR (COG1309), RVT-CRISPR