myRT

myRT report for GCA_900113355.1_IMG-taxon_2623620555_annotated_assembly

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Seq: FOPA01000018.1 (43428 bp)
Overview 1 RT 1: 36815-42269 bp Neighborhood of RT #1 [36815, 42269] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 36815-37579 bp Feature: gene Location: 37995-39251 bp Feature: gene Location: 39642-41438 bp Feature: domain Description: RVT_N Location: 39702-39942 bp Feature: domain Description: RVT_N Location: 39702-39942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39999-40665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39999-40665 bp Feature: domain Description: GIIM Note: maturase Location: 40743-40974 bp Feature: domain Description: GIIM Note: maturase Location: 40743-40974 bp Feature: domain Description: HNHc Note: nucleases Location: 41175-41337 bp Feature: domain Description: HNHc Note: nucleases Location: 41 1 75-41 337 bp Feature: gene Location: 41698-41859 bp Feature: gene Location: 42087-42269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: FOPA01000071.1 (1669 bp)
Overview 1 RT 1: 3-1224 bp Neighborhood of RT #1 [3, 1565] RVT_N RVT-GII GIIM Feature: gene Location: 3-1565 bp Feature: domain Description: RVT_N Location: 6-210 bp Feature: domain Description: RVT_N Location: 6-2 10 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264-924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 64-92 4 bp Feature: domain Description: GIIM Note: maturase Location: 990-1224 bp Feature: domain Description: GIIM Note: maturase Location: 990-12 2 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: FOPA01000070.1 (1672 bp)
Overview 1 RT 1: 3-1224 bp Neighborhood of RT #1 [3, 1565] RVT_N RVT-GII GIIM Feature: gene Location: 3-1565 bp Feature: domain Description: RVT_N Location: 6-210 bp Feature: domain Description: RVT_N Location: 6-210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264-924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264-924 bp Feature: domain Description: GIIM Note: maturase Location: 990-1224 bp Feature: domain Description: GIIM Note: maturase Location: 990-1224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: FOPA01000003.1 (838418 bp)
Overview 1 RT 1: 127773-134408 bp Neighborhood of RT #1 [127773, 134416] GIY-YIG_COG3680 IENR1 IENR1 IENR1 RVT-UG15 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like Peptidase_M29 Feature: gene Location: 127773-128762 bp Feature: domain Description: GIY-YIG_COG3680 Location: 127788-127965 bp Feature: domain Description: GIY-YIG_COG3680 Location: 127788-127965 bp Feature: domain Description: IENR1 Location: 128109-128256 bp Feature: domain Description: IENR1 Location: 128109-128256 bp Feature: domain Description: IENR1 Location: 128355-128511 bp Feature: domain Description: IENR1 Location: 128355-128511 bp Feature: domain Description: IENR1 Location: 128625-128751 bp Feature: domain Description: IENR1 Location: 128625-128751 bp Feature: gene Location: 129021-129284 bp Feature: gene Location: 129477-130958 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 129891-130284 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 129891-130284 bp Feature: gene Location: 131999-133123 bp Feature: domain Description: Arm-DNA-bind_4 Location: 132038-132167 bp Feature: domain Description: Arm-DNA-bind_4 Location: 132038-132167 bp Feature: domain Description: Phage_int_SAM_3 Location: 132206-132365 bp Feature: domain Description: Phage_int_SAM_3 Location: 132206-132365 bp Feature: domain Description: INT_ICEBs1_C_like Location: 132533-133061 bp Feature: domain Description: INT_ICEBs1_C_like Location: 132533-133061 bp Feature: gene Location: 133184-134416 bp Feature: domain Description: Peptidase_M29 Location: 133199-134408 bp Feature: domain Description: Peptidase_M29 Location: 133199-134 4 08 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_COG3680 (cd10440), IENR1 (smart00497), RVT-UG15, Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), Peptidase_M29 (pfam02073)

Seq: FOPA01000008.1 (140615 bp)
Overview 1 RT 1: 99068-105882 bp Neighborhood of RT #1 [99068, 105893] PRK10657 RocR RVT-GII Intron_maturas2 HNHc RocR MFS_1 MFS_YfmO_like Feature: gene Location: 99068-100240 bp Feature: domain Description: PRK10657 Location: 99071-100238 bp Feature: domain Description: PRK1065 7 Location: 99071-100238 bp Feature: gene Location: 100353-101000 bp Feature: domain Description: RocR Location: 100455-100941 bp Feature: domain Description: RocR Location: 10045 5 -100941 bp Feature: gene Location: 101550-103364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101814-102642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101814-102642 bp Feature: domain Description: Intron_maturas2 Location: 102720-103014 bp Feature: domain Description: Intron_maturas2 Location: 102720-103014 bp Feature: domain Description: HNHc Note: nucleases Location: 103161-103335 bp Feature: domain Description: HNHc Note: nucleases Location: 103161-103335 bp Feature: gene Location: 103505-104200 bp Feature: domain Description: RocR Location: 103511-104015 bp Feature: domain Description: RocR Location: 1035 11-104015 bp Feature: gene Location: 104607-105893 bp Feature: domain Description: MFS_1 Location: 104706-105729 bp Feature: domain Description: MFS_1 Location: 104706-105 729 bp Feature: domain Description: MFS_YfmO_like Location: 105780-105882 bp Feature: domain Description: MFS_YfmO_like Location: 105 780-105 882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10657 (isoaspartyl dipeptidase; Provisional), RocR (COG3829), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MFS_1 (pfam07690), MFS_YfmO_like (cd17474)